Examples with RelationshipModel bio.terra.model.RelationshipModel used on opensource projects

Example 1 with RelationshipModel

use of bio.terra.model.RelationshipModel in project jade-data-repo by DataBiosphere.

the class SnapshotService method makeRelationshipModelFromRelationship.

private RelationshipModel makeRelationshipModelFromRelationship(Relationship relationship) {
    RelationshipTermModel fromModel = new RelationshipTermModel().table(relationship.getFromTable().getName()).column(relationship.getFromColumn().getName());
    RelationshipTermModel toModel = new RelationshipTermModel().table(relationship.getToTable().getName()).column(relationship.getToColumn().getName());
    return new RelationshipModel().name(relationship.getName()).from(fromModel).to(toModel);
}

Example 2 with RelationshipModel

use of bio.terra.model.RelationshipModel in project jade-data-repo by DataBiosphere.

the class SnapshotConnectedTest method testMinimal.

@Test
public void testMinimal() throws Exception {
    DatasetSummaryModel datasetMinimalSummary = setupMinimalDataset();
    String datasetName = PDAO_PREFIX + datasetMinimalSummary.getName();
    BigQueryProject bigQueryProject = TestUtils.bigQueryProjectForDatasetName(datasetDao, dataLocationService, datasetMinimalSummary.getName());
    long datasetParticipants = queryForCount(datasetName, "participant", bigQueryProject);
    assertThat("dataset participants loaded properly", datasetParticipants, equalTo(2L));
    long datasetSamples = queryForCount(datasetName, "sample", bigQueryProject);
    assertThat("dataset samples loaded properly", datasetSamples, equalTo(5L));
    SnapshotRequestModel snapshotRequest = makeSnapshotTestRequest(datasetMinimalSummary, "dataset-minimal-snapshot.json");
    MockHttpServletResponse response = performCreateSnapshot(snapshotRequest, "");
    SnapshotSummaryModel summaryModel = validateSnapshotCreated(snapshotRequest, response);
    SnapshotModel snapshotModel = getTestSnapshot(summaryModel.getId(), snapshotRequest, datasetMinimalSummary);
    List<TableModel> tables = snapshotModel.getTables();
    Optional<TableModel> participantTable = tables.stream().filter(t -> t.getName().equals("participant")).findFirst();
    Optional<TableModel> sampleTable = tables.stream().filter(t -> t.getName().equals("sample")).findFirst();
    assertThat("participant table exists", participantTable.isPresent(), equalTo(true));
    assertThat("sample table exists", sampleTable.isPresent(), equalTo(true));
    long snapshotParticipants = queryForCount(summaryModel.getName(), "participant", bigQueryProject);
    assertThat("dataset participants loaded properly", snapshotParticipants, equalTo(1L));
    assertThat("participant row count matches expectation", participantTable.get().getRowCount(), equalTo(1));
    long snapshotSamples = queryForCount(summaryModel.getName(), "sample", bigQueryProject);
    assertThat("dataset samples loaded properly", snapshotSamples, equalTo(2L));
    assertThat("sample row count matches expectation", sampleTable.get().getRowCount(), equalTo(2));
    List<RelationshipModel> relationships = snapshotModel.getRelationships();
    assertThat("a relationship comes back", relationships.size(), equalTo(1));
    RelationshipModel relationshipModel = relationships.get(0);
    assertThat("relationship name is right", relationshipModel.getName(), equalTo("participant_sample"));
    assertThat("from table is right", relationshipModel.getFrom().getTable(), equalTo("participant"));
    assertThat("from column is right", relationshipModel.getFrom().getColumn(), equalTo("id"));
    assertThat("to table is right", relationshipModel.getTo().getTable(), equalTo("sample"));
    assertThat("to column is right", relationshipModel.getTo().getColumn(), equalTo("participant_id"));
}

Example 3 with RelationshipModel

use of bio.terra.model.RelationshipModel in project jade-data-repo by DataBiosphere.

the class DatasetValidationsTest method testInvalidRelationshipTermTableColumn.

@Test
public void testInvalidRelationshipTermTableColumn() throws Exception {
    // participant_id is part of the sample table, not participant
    RelationshipTermModel mismatchedTerm = new RelationshipTermModel().table("participant").column("participant_id");
    RelationshipModel mismatchedRelationship = new RelationshipModel().name("participant_sample").from(mismatchedTerm).to(buildSampleTerm());
    DatasetRequestModel req = buildDatasetRequest();
    req.getSchema().relationships(Collections.singletonList(mismatchedRelationship));
    ErrorModel errorModel = expectBadDatasetCreateRequest(req);
    checkValidationErrorModel(errorModel, new String[] { "InvalidRelationshipTermTableColumn" });
}

Example 4 with RelationshipModel

use of bio.terra.model.RelationshipModel in project jade-data-repo by DataBiosphere.

the class DatasetValidationsTest method testDuplicateRelationshipNames.

@Test
public void testDuplicateRelationshipNames() throws Exception {
    DatasetRequestModel req = buildDatasetRequest();
    RelationshipModel relationship = buildParticipantSampleRelationship();
    req.getSchema().relationships(Arrays.asList(relationship, relationship));
    ErrorModel errorModel = expectBadDatasetCreateRequest(req);
    checkValidationErrorModel(errorModel, new String[] { "DuplicateRelationshipNames" });
}