Examples with SnapshotRequestRowIdModel bio.terra.model.SnapshotRequestRowIdModel used on opensource projects

Example 6 with SnapshotRequestRowIdModel

use of bio.terra.model.SnapshotRequestRowIdModel in project jade-data-repo by DataBiosphere.

the class BigQueryPdao method createSnapshotWithProvidedIds.

public void createSnapshotWithProvidedIds(Snapshot snapshot, SnapshotRequestContentsModel contentsModel) throws InterruptedException {
    BigQueryProject bigQueryProject = bigQueryProjectForSnapshot(snapshot);
    String projectId = bigQueryProject.getProjectId();
    String snapshotName = snapshot.getName();
    BigQuery bigQuery = bigQueryProject.getBigQuery();
    SnapshotRequestRowIdModel rowIdModel = contentsModel.getRowIdSpec();
    // create snapshot BQ dataset
    snapshotCreateBQDataset(bigQueryProject, snapshot);
    // create the row id table
    bigQueryProject.createTable(snapshotName, PDAO_ROW_ID_TABLE, rowIdTableSchema());
    // populate root row ids. Must happen before the relationship walk.
    // NOTE: when we have multiple sources, we can put this into a loop
    SnapshotSource source = snapshot.getSnapshotSources().get(0);
    String datasetBqDatasetName = prefixName(source.getDataset().getName());
    for (SnapshotRequestRowIdTableModel table : rowIdModel.getTables()) {
        String tableName = table.getTableName();
        Table sourceTable = source.reverseTableLookup(tableName).orElseThrow(() -> new CorruptMetadataException("cannot find destination table: " + tableName));
        List<String> rowIds = table.getRowIds();
        if (rowIds.size() > 0) {
            ST sqlTemplate = new ST(loadRootRowIdsTemplate);
            sqlTemplate.add("project", projectId);
            sqlTemplate.add("snapshot", snapshotName);
            sqlTemplate.add("dataset", datasetBqDatasetName);
            sqlTemplate.add("tableId", sourceTable.getId().toString());
            sqlTemplate.add("rowIds", rowIds);
            bigQueryProject.query(sqlTemplate.render());
        }
        ST sqlTemplate = new ST(validateRowIdsForRootTemplate);
        sqlTemplate.add("project", projectId);
        sqlTemplate.add("snapshot", snapshotName);
        sqlTemplate.add("dataset", datasetBqDatasetName);
        sqlTemplate.add("table", sourceTable.getName());
        TableResult result = bigQueryProject.query(sqlTemplate.render());
        FieldValueList row = result.iterateAll().iterator().next();
        FieldValue countValue = row.get(0);
        if (countValue.getLongValue() != rowIds.size()) {
            logger.error("Invalid row ids supplied: rowIds=" + rowIds.size() + " count=" + countValue.getLongValue());
            for (String rowId : rowIds) {
                logger.error(" rowIdIn: " + rowId);
            }
            throw new PdaoException("Invalid row ids supplied");
        }
    }
    snapshotViewCreation(datasetBqDatasetName, snapshotName, snapshot, projectId, bigQuery, bigQueryProject);
}

Example 7 with SnapshotRequestRowIdModel

use of bio.terra.model.SnapshotRequestRowIdModel in project jade-data-repo by DataBiosphere.

the class SnapshotValidationTest method testSnapshotRowIdsEmptyRowIds.

@Test
public void testSnapshotRowIdsEmptyRowIds() throws Exception {
    SnapshotRequestRowIdModel rowIdSpec = snapshotByRowIdsRequestModel.getContents().get(0).getRowIdSpec();
    rowIdSpec.getTables().get(0).setRowIds(Collections.emptyList());
    expectBadSnapshotCreateRequest(snapshotByRowIdsRequestModel);
}