Examples with FlightMap bio.terra.stairway.FlightMap used on opensource projects

Example 1 with FlightMap

use of bio.terra.stairway.FlightMap in project jade-data-repo by DataBiosphere.

the class IngestUtils method getDataset.

public static Dataset getDataset(FlightContext context, DatasetService datasetService) {
    FlightMap inputParameters = context.getInputParameters();
    UUID datasetId = UUID.fromString(inputParameters.get(JobMapKeys.DATASET_ID.getKeyName(), String.class));
    return datasetService.retrieve(datasetId);
}

Example 2 with FlightMap

use of bio.terra.stairway.FlightMap in project jade-data-repo by DataBiosphere.

the class CreateDatasetAssetStep method doStep.

@Override
public StepResult doStep(FlightContext context) {
    // TODO: Asset columns and tables need to match things in the dataset schema
    Dataset dataset = getDataset(context);
    FlightMap map = context.getWorkingMap();
    // get the dataset assets that already exist --asset name needs to be unique
    AssetSpecification newAssetSpecification = getNewAssetSpec(context, dataset);
    // add a fault that forces an exception to make sure the undo works
    try {
        configService.fault(ConfigEnum.CREATE_ASSET_FAULT, () -> {
            throw new RuntimeException("fault insertion");
        });
    } catch (Exception e) {
        throw new RuntimeException(e);
    }
    try {
        assetDao.create(newAssetSpecification, dataset.getId());
    } catch (InvalidAssetException e) {
        FlightUtils.setErrorResponse(context, e.getMessage(), HttpStatus.BAD_REQUEST);
        map.put(DatasetWorkingMapKeys.ASSET_NAME_COLLISION, true);
        return new StepResult(StepStatus.STEP_RESULT_FAILURE_FATAL, e);
    }
    map.put(JobMapKeys.STATUS_CODE.getKeyName(), HttpStatus.CREATED);
    return StepResult.getStepResultSuccess();
}

Example 3 with FlightMap

use of bio.terra.stairway.FlightMap in project jade-data-repo by DataBiosphere.

the class CreateDatasetAuthzBqJobUserStep method doStep.

@Override
public StepResult doStep(FlightContext context) throws InterruptedException {
    FlightMap workingMap = context.getWorkingMap();
    UUID datasetId = workingMap.get(DatasetWorkingMapKeys.DATASET_ID, UUID.class);
    Map<IamRole, String> policies = workingMap.get(DatasetWorkingMapKeys.POLICY_EMAILS, Map.class);
    Dataset dataset = datasetService.retrieve(datasetId);
    DatasetModel datasetModel = datasetService.retrieveModel(dataset);
    // The underlying service provides retries so we do not need to retry this operation
    resourceService.grantPoliciesBqJobUser(datasetModel.getDataProject(), policies.values());
    return StepResult.getStepResultSuccess();
}

Example 4 with FlightMap

use of bio.terra.stairway.FlightMap in project jade-data-repo by DataBiosphere.

the class CreateDatasetAuthzIamStep method undoStep.

@Override
public StepResult undoStep(FlightContext context) throws InterruptedException {
    FlightMap workingMap = context.getWorkingMap();
    UUID datasetId = workingMap.get(DatasetWorkingMapKeys.DATASET_ID, UUID.class);
    try {
        iamClient.deleteDatasetResource(userReq, datasetId);
    } catch (UnauthorizedException ex) {
        // suppress exception
        logger.error("NEEDS CLEANUP: delete sam resource for dataset " + datasetId.toString(), ex);
    } catch (NotFoundException ex) {
    // if the SAM resource is not found, then it was likely not created -- continue undoing
    }
    return StepResult.getStepResultSuccess();
}

Example 5 with FlightMap

use of bio.terra.stairway.FlightMap in project jade-data-repo by DataBiosphere.

the class CreateDatasetAuthzIamStep method doStep.

@Override
public StepResult doStep(FlightContext context) throws InterruptedException {
    FlightMap workingMap = context.getWorkingMap();
    UUID datasetId = workingMap.get(DatasetWorkingMapKeys.DATASET_ID, UUID.class);
    Map<IamRole, String> policyEmails = iamClient.createDatasetResource(userReq, datasetId);
    workingMap.put(DatasetWorkingMapKeys.POLICY_EMAILS, policyEmails);
    return StepResult.getStepResultSuccess();
}