Examples with ExecutionManagerDownloadException ca.corefacility.bioinformatics.irida.exceptions.ExecutionManagerDownloadException used on opensource projects

Example 1 with ExecutionManagerDownloadException

use of ca.corefacility.bioinformatics.irida.exceptions.ExecutionManagerDownloadException in project irida by phac-nml.

the class GalaxyHistoriesService method downloadDatasetTo.

/**
 * Given a particular dataset id within a Galaxy history download this
 * dataset to the local filesystem.
 *
 * @param historyId
 *            The id of the history containing the dataset.
 * @param datasetId
 *            The id of the dataset to download.
 * @param destination
 *            The destination to download a file to (will overwrite any
 *            exisiting content).
 * @throws IOException
 *             If there was an error downloading the file.
 * @throws ExecutionManagerDownloadException
 *             If there was an issue downloading the dataset.
 */
public void downloadDatasetTo(String historyId, String datasetId, Path destination) throws IOException, ExecutionManagerDownloadException {
    checkNotNull(historyId, "historyId is null");
    checkNotNull(datasetId, "datasetId is null");
    checkNotNull(destination, "destination is null");
    try {
        historiesClient.downloadDataset(historyId, datasetId, destination.toFile());
    } catch (RuntimeException e) {
        throw new ExecutionManagerDownloadException("Could not download dataset identified by historyId=" + historyId + ", datasetId=" + datasetId + " to destination=" + destination, e);
    }
}