Examples with NoPercentageCompleteException ca.corefacility.bioinformatics.irida.exceptions.NoPercentageCompleteException used on opensource projects

Example 1 with NoPercentageCompleteException

use of ca.corefacility.bioinformatics.irida.exceptions.NoPercentageCompleteException in project irida by phac-nml.

the class AnalysisSubmissionServiceImpl method getPercentCompleteForAnalysisSubmission.

/**
 * {@inheritDoc}
 */
@Override
@PreAuthorize("hasRole('ROLE_ADMIN') or hasPermission(#id, 'canReadAnalysisSubmission')")
public float getPercentCompleteForAnalysisSubmission(Long id) throws EntityNotFoundException, ExecutionManagerException, NoPercentageCompleteException {
    AnalysisSubmission analysisSubmission = read(id);
    AnalysisState analysisState = analysisSubmission.getAnalysisState();
    switch(analysisState) {
        case NEW:
        case PREPARING:
        case PREPARED:
        case SUBMITTING:
            return STATE_PERCENTAGE.get(analysisState);
        /**
         * If the analysis is in a state of {@link AnalysisState.RUNNING}
         * then we are able to ask Galaxy for the proportion of jobs that
         * are complete. We can scale this value between RUNNING_PERCENT
         * (10%) and FINISHED_RUNNING_PERCENT (90%) so that after all jobs
         * are complete we are only at 90%. The remaining 10% involves
         * transferring files back to Galaxy.
         *
         * For example, if there are 10 out of 20 jobs finished on Galaxy,
         * then the proportion of jobs complete is 10/20 = 0.5. So, the
         * percent complete for the overall analysis is: percentComplete =
         * 10 + (90 - 10) * 0.5 = 50%.
         *
         * If there are 20 out of 20 jobs finished in Galaxy, then the
         * percent complete is: percentComplete = 10 + (90 - 10) * 1.0 =
         * 90%.
         */
        case RUNNING:
            String workflowHistoryId = analysisSubmission.getRemoteAnalysisId();
            GalaxyWorkflowStatus workflowStatus = galaxyHistoriesService.getStatusForHistory(workflowHistoryId);
            return RUNNING_PERCENT + (FINISHED_RUNNING_PERCENT - RUNNING_PERCENT) * workflowStatus.getProportionComplete();
        case FINISHED_RUNNING:
        case COMPLETING:
        case TRANSFERRED:
        case POST_PROCESSING:
        case COMPLETED:
            return STATE_PERCENTAGE.get(analysisState);
        default:
            throw new NoPercentageCompleteException("No valid percent complete for state " + analysisState);
    }
}