Examples with ProjectSampleJoin ca.corefacility.bioinformatics.irida.model.joins.impl.ProjectSampleJoin used on opensource projects

Example 41 with ProjectSampleJoin

use of ca.corefacility.bioinformatics.irida.model.joins.impl.ProjectSampleJoin in project irida by phac-nml.

the class UpdateSamplePermissionTest method testRejectPermissionNotOwner.

@Test
public void testRejectPermissionNotOwner() {
    final Project p1 = new Project();
    final Sample s = new Sample();
    when(projectSampleJoinRepository.getProjectForSample(s)).thenReturn(ImmutableList.of(new ProjectSampleJoin(p1, s, false)));
    when(projectOwnerPermission.isAllowed(auth, p1)).thenReturn(true);
    assertFalse("Permission to update sample should not be given.", updateSamplePermission.isAllowed(auth, s));
}

Example 42 with ProjectSampleJoin

use of ca.corefacility.bioinformatics.irida.model.joins.impl.ProjectSampleJoin in project irida by phac-nml.

the class TestDataFactory method constructListJoinProjectSample.

public static List<Join<Project, Sample>> constructListJoinProjectSample() {
    List<Join<Project, Sample>> list = new ArrayList<>();
    Sample sample = constructSample();
    Project project = constructProject();
    for (int i = 0; i < 10; i++) {
        list.add(new ProjectSampleJoin(project, sample, true));
    }
    return list;
}

Example 43 with ProjectSampleJoin

use of ca.corefacility.bioinformatics.irida.model.joins.impl.ProjectSampleJoin in project irida by phac-nml.

the class ProjectServiceImplIT method testMoveSamplesWithOwner.

@Test
@WithMockUser(username = "user1", roles = "USER")
public void testMoveSamplesWithOwner() {
    Project source = projectService.read(2L);
    Project destination = projectService.read(10L);
    Sample sample1 = sampleService.read(1L);
    Set<Sample> samples = Sets.newHashSet(sample1);
    List<ProjectSampleJoin> movedSamples = projectService.moveSamples(source, destination, samples, true);
    assertEquals(samples.size(), movedSamples.size());
    movedSamples.forEach(j -> {
        assertTrue("Project should be owner for sample", j.isOwner());
    });
    assertNull("Sample should have been moved from source project", projectSampleJoinRepository.readSampleForProject(source, sample1));
    assertNotNull("Sample should have been moved to destination project", projectSampleJoinRepository.readSampleForProject(destination, sample1));
}

Example 44 with ProjectSampleJoin

use of ca.corefacility.bioinformatics.irida.model.joins.impl.ProjectSampleJoin in project irida by phac-nml.

the class ProjectServiceImplIT method testMoveLockedSamplesWithoutOwner.

@Test
@WithMockUser(username = "user1", roles = "USER")
public void testMoveLockedSamplesWithoutOwner() {
    Project source = projectService.read(2L);
    Project destination = projectService.read(10L);
    List<Join<Project, Sample>> samplesForProject = sampleService.getSamplesForProject(source);
    Set<Sample> samples = samplesForProject.stream().map(j -> j.getObject()).collect(Collectors.toSet());
    List<ProjectSampleJoin> movedSamples = projectService.moveSamples(source, destination, samples, false);
    assertEquals(samples.size(), movedSamples.size());
    movedSamples.forEach(j -> {
        assertFalse("Project shouldn't be owner for sample", j.isOwner());
    });
    assertEquals("Samples should not exist in source project", Long.valueOf(0L), projectSampleJoinRepository.countSamplesForProject(source));
    assertEquals("Samples should exist in destination project", Sets.newHashSet(1L, 2L), projectSampleJoinRepository.getSamplesForProject(destination).stream().map(j -> j.getObject().getId()).collect(Collectors.toSet()));
}

Example 45 with ProjectSampleJoin

use of ca.corefacility.bioinformatics.irida.model.joins.impl.ProjectSampleJoin in project irida by phac-nml.

the class ProjectServiceImplIT method testShareSamplesWithoutOwnerRemote.

@Test
@WithMockUser(username = "user1", roles = "USER")
public void testShareSamplesWithoutOwnerRemote() {
    Project source = projectService.read(11L);
    Project destination = projectService.read(10L);
    assertTrue("Source project should be a remote project for the test", source.isRemote());
    assertFalse("Destination project should not be a remote project for the test", destination.isRemote());
    Sample sample = sampleService.read(3L);
    Set<Sample> samples = Sets.newHashSet(sample);
    List<ProjectSampleJoin> copiedSamples = projectService.shareSamples(source, destination, samples, false);
    assertEquals(samples.size(), copiedSamples.size());
    copiedSamples.forEach(j -> {
        assertFalse("Project should not be owner for sample", j.isOwner());
    });
    assertNotNull("Samples should still exist in source project", projectSampleJoinRepository.readSampleForProject(source, sample));
    assertNotNull("Sample should exist in destination project", projectSampleJoinRepository.readSampleForProject(destination, sample));
}