Examples with ExecutionManagerGalaxy ca.corefacility.bioinformatics.irida.model.workflow.manager.galaxy.ExecutionManagerGalaxy used on opensource projects

Example 1 with ExecutionManagerGalaxy

use of ca.corefacility.bioinformatics.irida.model.workflow.manager.galaxy.ExecutionManagerGalaxy in project irida by phac-nml.

the class ExecutionManagerConfig method buildExecutionManager.

/**
 * Builds a new ExecutionManagerGalaxy given the following environment properties.
 * @param urlProperty The property defining the URL to Galaxy.
 * @param apiKeyProperty  The property defining the API key to Galaxy.
 * @param emailProperty  The property defining the account email in Galaxy.
 * @param dataStorageProperty  The property defning the data storage method.
 * @return  An ExecutionManagerGalaxy.
 * @throws ExecutionManagerConfigurationException If there was an issue building an ExecutionManagerGalaxy
 * 	from the given properties.
 */
private ExecutionManagerGalaxy buildExecutionManager(String urlProperty, String apiKeyProperty, String emailProperty, String dataStorageProperty) throws ExecutionManagerConfigurationException {
    URL galaxyURL = getGalaxyURL(urlProperty);
    GalaxyAccountEmail galaxyEmail = getGalaxyEmail(emailProperty);
    String apiKey = getAPIKey(apiKeyProperty);
    DataStorage dataStorage = getDataStorage(dataStorageProperty);
    return new ExecutionManagerGalaxy(galaxyURL, apiKey, galaxyEmail, dataStorage);
}