Examples with Position ca.nrc.cadc.caom2.Position used on opensource projects

Example 1 with Position

use of ca.nrc.cadc.caom2.Position in project geotoolkit by Geomatys.

the class SmlXMLBindingTest method ComponentUnmarshallMarshalingTest.

/**
 * Test simple Record Marshalling.
 *
 * @throws java.lang.Exception
 */
@Test
public void ComponentUnmarshallMarshalingTest() throws Exception {
    Unmarshaller unmarshaller = SensorMLMarshallerPool.getInstance().acquireUnmarshaller();
    InputStream is = SmlXMLBindingTest.class.getResourceAsStream("/org/geotoolkit/sml/component.xml");
    Object unmarshalled = unmarshaller.unmarshal(is);
    if (unmarshalled instanceof JAXBElement) {
        unmarshalled = ((JAXBElement) unmarshalled).getValue();
    }
    assertTrue(unmarshalled instanceof SensorML);
    SensorML result = (SensorML) unmarshalled;
    Member member = new Member();
    member.setRole("urn:x-ogx:def:sensor:OGC:detector");
    ComponentType component = new ComponentType();
    List<JAXBElement<String>> kw = new ArrayList<JAXBElement<String>>();
    kw.add(sml100Factory.createKeywordsKeywordListKeyword("piezometer"));
    kw.add(sml100Factory.createKeywordsKeywordListKeyword("geosciences"));
    kw.add(sml100Factory.createKeywordsKeywordListKeyword("point d'eau"));
    Keywords keywords = new Keywords(new KeywordList(URI.create("urn:x-brgm:def:gcmd:keywords"), kw));
    component.setKeywords(keywords);
    Classifier cl1 = new Classifier("intendedApplication", new Term("eaux souterraines", URI.create("urn:x-ogc:def:classifier:OGC:application")));
    CodeSpacePropertyType cs = new CodeSpacePropertyType("urn:x-brgm:def:GeoPoint:bss");
    Classifier cl2 = new Classifier("sensorType", new Term(cs, "Profondeur", URI.create("urn:sensor:classifier:sensorType")));
    List<Classifier> cls = new ArrayList<Classifier>();
    cls.add(cl1);
    cls.add(cl2);
    ClassifierList claList = new ClassifierList(null, cls);
    Classification classification = new Classification(claList);
    component.setClassification(classification);
    List<Identifier> identifiers = new ArrayList<Identifier>();
    cs = new CodeSpacePropertyType("urn:x-brgm:def:sensorSystem:hydras");
    Identifier id1 = new Identifier("supervisorCode", new Term(cs, "00ARGLELES_2000", URI.create("urn:x-ogc:def:identifier:OGC:modelNumber")));
    Identifier id2 = new Identifier("longName", new Term("Madofil II", URI.create("urn:x-ogc:def:identifier:OGC:longname")));
    identifiers.add(id1);
    identifiers.add(id2);
    IdentifierList identifierList = new IdentifierList(null, identifiers);
    Identification identification = new Identification(identifierList);
    component.setIdentification(identification);
    TimePeriodType period = new TimePeriodType(new TimePositionType("2004-06-01"));
    ValidTime vTime = new ValidTime(period);
    component.setValidTime(vTime);
    Capabilities capabilities = new Capabilities();
    TimeRange timeRange = new TimeRange(Arrays.asList("1987-04-23", "now"));
    DataComponentPropertyType field = new DataComponentPropertyType("periodOfData", "urn:x-brgm:def:property:periodOfData", timeRange);
    DataRecordType record = new DataRecordType("urn:x-brgm:def:property:periodOfData", Arrays.asList(field));
    JAXBElement<? extends AbstractDataRecordType> jbRecord = swe100Factory.createDataRecord(record);
    capabilities.setAbstractDataRecord(jbRecord);
    component.setCapabilities(capabilities);
    Contact contact = new Contact("urn:x-ogc:def:role:manufacturer", new ResponsibleParty("IRIS"));
    component.setContact(contact);
    Position position = new Position("conductivitePosition", "piezometer#piezoPosition");
    component.setPosition(position);
    IoComponentPropertyType io = new IoComponentPropertyType("level", new ObservableProperty("urn:x-ogc:def:phenomenon:OGC:level"));
    InputList inputList = new InputList(Arrays.asList(io));
    Inputs inputs = new Inputs(inputList);
    component.setInputs(inputs);
    IoComponentPropertyType io2 = new IoComponentPropertyType("depth", new ObservableProperty("urn:x-ogc:def:phenomenon:OGC:depth"));
    OutputList outputList = new OutputList(Arrays.asList(io2));
    Outputs outputs = new Outputs(outputList);
    component.setOutputs(outputs);
    List<DataComponentPropertyType> params = new ArrayList<DataComponentPropertyType>();
    UomPropertyType uom = new UomPropertyType(null, "urn:ogc:unit:minuts");
    QuantityType quantity1 = new QuantityType("urn:x-ogc:def:property:frequency", uom, 60.0);
    DataComponentPropertyType p1 = new DataComponentPropertyType("frequency", "urn:x-ogc:def:property:frequency", quantity1);
    params.add(p1);
    UomPropertyType uom2 = new UomPropertyType("m", null);
    QuantityType quantity2 = new QuantityType("urn:x-ogc:def:property:precision", uom2, 0.05);
    DataComponentPropertyType p2 = new DataComponentPropertyType("precision", "urn:x-ogc:def:property:precision", quantity2);
    params.add(p2);
    QuantityRange quantityRange = new QuantityRange(uom2, Arrays.asList(0.0, 10.0));
    DataComponentPropertyType p3 = new DataComponentPropertyType("validity", "urn:x-ogc:def:property:validity", quantityRange);
    params.add(p3);
    ParameterList paramList = new ParameterList(params);
    Parameters parameters = new Parameters(paramList);
    component.setParameters(parameters);
    component.setPosition(new Position("conductivitePosition", "piezometer#piezoPosition"));
    component.setName(new DefaultIdentifier("Capteur Profondeur de ARGELES"));
    member.setProcess(sml100Factory.createComponent(component));
    SensorML expectedResult = new SensorML("1.0", Arrays.asList(member));
    assertEquals(result.getMember().size(), 1);
    assertTrue(result.getMember().get(0).getProcess() != null);
    assertTrue(result.getMember().get(0).getProcess().getValue() instanceof ComponentType);
    ComponentType resultProcess = (ComponentType) result.getMember().get(0).getProcess().getValue();
    assertEquals(resultProcess.getCapabilities(), component.getCapabilities());
    assertTrue(resultProcess.getContact().size() == 1);
    assertEquals(resultProcess.getContact().get(0).getContactList(), component.getContact().get(0).getContactList());
    assertEquals(resultProcess.getContact().get(0).getResponsibleParty().getContactInfo(), component.getContact().get(0).getResponsibleParty().getContactInfo());
    assertEquals(resultProcess.getContact().get(0).getResponsibleParty().getOrganizationName(), component.getContact().get(0).getResponsibleParty().getOrganizationName());
    assertEquals(resultProcess.getContact().get(0).getResponsibleParty(), component.getContact().get(0).getResponsibleParty());
    assertEquals(resultProcess.getContact().get(0), component.getContact().get(0));
    assertEquals(resultProcess.getContact(), component.getContact());
    assertTrue(resultProcess.getClassification().size() == 1);
    assertTrue(resultProcess.getClassification().get(0).getClassifierList().getClassifier().size() == 2);
    assertEquals(resultProcess.getClassification().get(0).getClassifierList().getClassifier().get(0).getTerm(), component.getClassification().get(0).getClassifierList().getClassifier().get(0).getTerm());
    assertEquals(resultProcess.getClassification().get(0).getClassifierList().getClassifier().get(0), component.getClassification().get(0).getClassifierList().getClassifier().get(0));
    assertEquals(resultProcess.getClassification().get(0).getClassifierList().getClassifier(), component.getClassification().get(0).getClassifierList().getClassifier());
    assertEquals(resultProcess.getClassification().get(0).getClassifierList(), component.getClassification().get(0).getClassifierList());
    assertEquals(resultProcess.getClassification().get(0), component.getClassification().get(0));
    assertEquals(resultProcess.getClassification(), component.getClassification());
    assertEquals(resultProcess.getIdentification(), component.getIdentification());
    assertEquals(resultProcess.getValidTime(), component.getValidTime());
    assertEquals(resultProcess.getParameters(), component.getParameters());
    assertEquals(resultProcess.getInputs().getInputList().getInput(), component.getInputs().getInputList().getInput());
    assertEquals(resultProcess.getInputs().getInputList(), component.getInputs().getInputList());
    assertEquals(resultProcess.getInputs(), component.getInputs());
    assertEquals(resultProcess.getOutputs(), component.getOutputs());
    assertEquals(resultProcess.getSMLLocation(), component.getSMLLocation());
    assertEquals(resultProcess.getPosition(), component.getPosition());
    assertEquals(resultProcess.getSpatialReferenceFrame(), component.getSpatialReferenceFrame());
    assertEquals(resultProcess.getDocumentation(), component.getDocumentation());
    assertEquals(resultProcess.getCharacteristics(), component.getCharacteristics());
    assertEquals(resultProcess.getKeywords(), component.getKeywords());
    assertEquals(resultProcess.getParameters(), component.getParameters());
    assertEquals(resultProcess.getName(), component.getName());
    assertEquals(resultProcess, component);
    assertEquals(expectedResult.getMember().get(0), result.getMember().get(0));
    assertEquals(expectedResult.getMember(), result.getMember());
    assertEquals(expectedResult, result);
    SensorMLMarshallerPool.getInstance().recycle(unmarshaller);
}

Example 2 with Position

use of ca.nrc.cadc.caom2.Position in project geotoolkit by Geomatys.

the class SmlXMLBindingTest method SystemUnmarshallMarshalingTest.

/**
 * Test simple Record Marshalling.
 *
 * @throws java.lang.Exception
 */
@Test
public void SystemUnmarshallMarshalingTest() throws Exception {
    Unmarshaller unmarshaller = SensorMLMarshallerPool.getInstance().acquireUnmarshaller();
    InputStream is = SmlXMLBindingTest.class.getResourceAsStream("/org/geotoolkit/sml/system.xml");
    Object unmarshalled = unmarshaller.unmarshal(is);
    if (unmarshalled instanceof JAXBElement) {
        unmarshalled = ((JAXBElement) unmarshalled).getValue();
    }
    assertTrue(unmarshalled instanceof SensorML);
    SensorML result = (SensorML) unmarshalled;
    Member member = new Member();
    member.setRole("urn:x-ogx:def:sensor:OGC:detector");
    SystemType system = new SystemType();
    List<JAXBElement<String>> kw = new ArrayList<JAXBElement<String>>();
    kw.add(sml100Factory.createKeywordsKeywordListKeyword("piezometer"));
    kw.add(sml100Factory.createKeywordsKeywordListKeyword("geosciences"));
    kw.add(sml100Factory.createKeywordsKeywordListKeyword("point d'eau"));
    Keywords keywords = new Keywords(new KeywordList(URI.create("urn:x-brgm:def:gcmd:keywords"), kw));
    system.setKeywords(keywords);
    Classifier cl1 = new Classifier("intendedApplication", new Term("eaux souterraines", URI.create("urn:x-ogc:def:classifier:OGC:application")));
    CodeSpacePropertyType cs = new CodeSpacePropertyType("urn:x-brgm:def:GeoPoint:bss");
    Classifier cl2 = new Classifier("sensorType", new Term(cs, "piezometer", URI.create("urn:sensor:classifier:sensorType")));
    CodeSpacePropertyType cs3 = new CodeSpacePropertyType("urn:x-sandre:def:mdo:identifier");
    Classifier cl3 = new Classifier("waterBody", new Term(cs3, "FR6221", URI.create("urn:sensor:classifier:references")));
    CodeSpacePropertyType cs4 = new CodeSpacePropertyType("urn:x-sandre:def:mdo:name");
    Classifier cl4 = new Classifier("waterBody", new Term(cs4, "Multicouche pliocene et alluvions quaternaires du Roussillon", URI.create("urn:sensor:classifier:references")));
    CodeSpacePropertyType cs5 = new CodeSpacePropertyType("urn:x-sandre:def:bdhrf:identifier");
    Classifier cl5 = new Classifier("hydrologicalEntity", new Term(cs5, "225", URI.create("urn:sensor:classifier:references")));
    CodeSpacePropertyType cs6 = new CodeSpacePropertyType("urn:x-sandre:def:bdhrf:name");
    Classifier cl6 = new Classifier("hydrologicalEntity", new Term(cs6, "Pliocene du Roussillon", URI.create("urn:sensor:classifier:references")));
    CodeSpacePropertyType cs7 = new CodeSpacePropertyType("urn:x-insee:def:commune:identifier");
    Classifier cl7 = new Classifier("commune", new Term(cs7, "66008", URI.create("urn:sensor:classifier:references")));
    CodeSpacePropertyType cs8 = new CodeSpacePropertyType("urn:x-insee:def:commune:name");
    Classifier cl8 = new Classifier("commune", new Term(cs8, "ARGELES SUR MER", URI.create("urn:sensor:classifier:references")));
    CodeSpacePropertyType cs9 = new CodeSpacePropertyType("urn:x-sandre:def:network:identifier");
    Classifier cl9 = new Classifier("network", new Term(cs9, "600000221", URI.create("urn:sensor:classifier:references")));
    CodeSpacePropertyType cs10 = new CodeSpacePropertyType("urn:x-sandre:def:network:identifier");
    Classifier cl10 = new Classifier("network", new Term(cs10, "600000025", URI.create("urn:sensor:classifier:references")));
    List<Classifier> cls = new ArrayList<Classifier>();
    cls.add(cl1);
    cls.add(cl2);
    cls.add(cl3);
    cls.add(cl4);
    cls.add(cl5);
    cls.add(cl6);
    cls.add(cl7);
    cls.add(cl8);
    cls.add(cl9);
    cls.add(cl10);
    ClassifierList claList = new ClassifierList(null, cls);
    Classification classification = new Classification(claList);
    system.setClassification(classification);
    List<Identifier> identifiers = new ArrayList<Identifier>();
    cs = new CodeSpacePropertyType("urn:x-brgm:def:samplingStation:bss");
    Identifier id1 = new Identifier("bssCode", new Term(cs, "10972X0137/PONT", URI.create("urn:x-ogc:def:identifier:OGC:modelNumber")));
    cs = new CodeSpacePropertyType("urn:x-brgm:def:sensorSystem:hydras");
    Identifier id2 = new Identifier("supervisorCode", new Term(cs, "00ARGLELES", URI.create("urn:x-ogc:def:identifier:OGC:modelNumber")));
    Identifier id3 = new Identifier("longName", new Term("ARGELES", URI.create("urn:x-ogc:def:identifier:OGC:longname")));
    identifiers.add(id1);
    identifiers.add(id2);
    identifiers.add(id3);
    IdentifierList identifierList = new IdentifierList(null, identifiers);
    Identification identification = new Identification(identifierList);
    system.setIdentification(identification);
    Capabilities capabilities = new Capabilities();
    List<DataComponentPropertyType> fields = new ArrayList<DataComponentPropertyType>();
    QuantityType quantity = new QuantityType("urn:x-ogc:def:property:temperature", new UomPropertyType(null, "urn:ogc:unit:degree:celsius"), 0.1);
    DataComponentPropertyType field1 = new DataComponentPropertyType("resolution", "urn:x-ogc:def:property:resolution", quantity);
    fields.add(field1);
    QuantityRange quantityR = new QuantityRange(new UomPropertyType(null, "urn:ogc:unit:percent"), Arrays.asList(-0.5, 0.5));
    quantityR.setDefinition("urn:x-ogc:def:property:absoluteAccuracy");
    DataComponentPropertyType field2 = new DataComponentPropertyType("accuracy", "urn:x-ogc:def:property:accuracy", quantityR);
    fields.add(field2);
    DataRecordType record = new DataRecordType("urn:x-ogc:def:property:measurementProperties", fields);
    record.setDescription("Toutes les informations sur les  contraintes sur les donnees");
    JAXBElement<? extends AbstractDataRecordType> jbRecord = swe100Factory.createDataRecord(record);
    capabilities.setAbstractDataRecord(jbRecord);
    system.setCapabilities(capabilities);
    AddressType address1 = new AddressType("SGR LRO-1039 Rue de Pinville-34000 Montpellier", "MONTPELLIER", null, null, null, "m.blaise@brgm.fr");
    ContactInfo contactInfo1 = new ContactInfo(null, address1);
    ResponsibleParty resp1 = new ResponsibleParty("BLAISE Marion (BRGM)", "BRGM", null, contactInfo1);
    Contact contact1 = new Contact("urn:x-ogc:def:role:producer", resp1);
    AddressType address2 = new AddressType("Hotel du Departement, B.P. 906, 66 906 Perpignan Cedex", "PERPIGNAN", null, null, null, null);
    ContactInfo contactInfo2 = new ContactInfo(null, address2);
    ResponsibleParty resp2 = new ResponsibleParty("ASSENS Martine (CG66)", "CONSEIL GENERAL DES PYRENEES ORIENTALES", null, contactInfo2);
    Contact contact2 = new Contact("urn:x-ogc:def:role:owner", resp2);
    system.setContact(Arrays.asList(contact1, contact2));
    IoComponentPropertyType io = new IoComponentPropertyType("level", new ObservableProperty("urn:x-ogc:def:phenomenon:OGC:level"));
    InputList inputList = new InputList(Arrays.asList(io));
    Inputs inputs = new Inputs(inputList);
    system.setInputs(inputs);
    fields = new ArrayList<DataComponentPropertyType>();
    TimeType time = new TimeType("urn:x-ogc:def:phenomenon:observationTime", new UomPropertyType(null, "urn:x-ogc:def:unit:ISO8601"));
    fields.add(new DataComponentPropertyType("time", null, time));
    QuantityType q = new QuantityType("urn:x-ogc:def:phenomenon:OGC:depth", new UomPropertyType("m", null), null);
    fields.add(new DataComponentPropertyType("depth", null, q));
    BooleanType b = new BooleanType("urn:x-ogc:def:phenomenon:BRGM:validity", null);
    fields.add(new DataComponentPropertyType("validity", null, b));
    DataRecordType outRecord = new DataRecordType(null, fields);
    outRecord.setId("outputGroup");
    IoComponentPropertyType io2 = new IoComponentPropertyType("piezoMeasurements", swe100Factory.createDataRecord(outRecord));
    OutputList outputList = new OutputList(Arrays.asList(io2));
    Outputs outputs = new Outputs(outputList);
    system.setOutputs(outputs);
    fields = new ArrayList<DataComponentPropertyType>();
    q = new QuantityType("urn:x-ogc:def:property:depth", new UomPropertyType(null, "urn:ogc:unit:m"), 166.0);
    fields.add(new DataComponentPropertyType("MaxDepth", null, q));
    DataRecordType charRecord = new DataRecordType(null, fields);
    List<DataComponentPropertyType> fields2 = new ArrayList<DataComponentPropertyType>();
    fields2.add(new DataComponentPropertyType("physicalProperties", null, swe100Factory.createDataRecord(charRecord)));
    DataRecordType ccharRecord = new DataRecordType("urn:x-ogc:def:property:physicalProperties", fields2);
    Characteristics characteristics = new Characteristics();
    characteristics.setAbstractDataRecord(swe100Factory.createDataRecord(ccharRecord));
    system.setCharacteristics(characteristics);
    DirectPositionType pos = new DirectPositionType("urn:ogc:crs:EPSG:27582", 2, Arrays.asList(65400.0, 1731368.0));
    PointType point = new PointType("STATION_LOCALISATION", pos);
    Location location = new Location(point);
    system.setSMLLocation(location);
    EngineeringDatumType engineeringDatum = new EngineeringDatumType("datum", "Sensor Datum", new CodeType("X, Y et Z sont orthogonal au regard d'un point de reference."));
    EngineeringDatumRefType usesEngineeringDatum = new EngineeringDatumRefType(engineeringDatum);
    EngineeringCRSType engineeringCRS = new EngineeringCRSType("STATION_FRAME", "Position absolue du capteur", new CoordinateSystemRefType("urn:ogc:def:crs:ogc:1.0:xyzFrame"), usesEngineeringDatum);
    SpatialReferenceFrame spatialReferenceFrame = new SpatialReferenceFrame(engineeringCRS);
    system.setSpatialReferenceFrame(spatialReferenceFrame);
    Document doc = new Document("Fiche descriptive de la station", "text/html", Arrays.asList(new OnlineResource("http://ades.eaufrance.fr/FichePtEau.aspx?code=10972X0137/PONT")));
    Documentation documentation = new Documentation(doc);
    documentation.setRole("urn:ogc:role:description");
    system.setDocumentation(Arrays.asList(documentation));
    List<ComponentPropertyType> compos = new ArrayList<ComponentPropertyType>();
    compos.add(new ComponentPropertyType("Profondeur", "urn:x-ogc:def:sensor:detector", "capteur_"));
    ComponentList componentList = new ComponentList(compos);
    Components components = new Components(componentList);
    system.setComponents(components);
    List<CoordinateType> coordinates = new ArrayList<CoordinateType>();
    QuantityType xQuant = new QuantityType("urn:ogc:def:phenomenon:distance", new UomPropertyType("m", null), 0.0);
    xQuant.setAxisID("X");
    CoordinateType xcoord = new CoordinateType("x", xQuant);
    QuantityType yQuant = new QuantityType("urn:ogc:def:phenomenon:distance", new UomPropertyType("m", null), 0.0);
    yQuant.setAxisID("Y");
    CoordinateType ycoord = new CoordinateType("y", yQuant);
    QuantityType zQuant = new QuantityType("urn:ogc:def:phenomenon:distance", new UomPropertyType("m", null), 0.0);
    zQuant.setAxisID("Z");
    CoordinateType zcoord = new CoordinateType("z", zQuant);
    coordinates.add(xcoord);
    coordinates.add(ycoord);
    coordinates.add(zcoord);
    VectorType vect = new VectorType("urn:ogc:def:phenomenon:location", coordinates);
    VectorPropertyType vectP = new VectorPropertyType(vect);
    PositionType Sposition = new PositionType(URI.create("#REFERENCE_POINT"), URI.create("#PIEZOMETER_FRAME"), vectP, null);
    Position position = new Position("piezoPosition", Sposition);
    PositionList positionList = new PositionList(null, Arrays.asList(position));
    Positions positions = new Positions(positionList);
    system.setPositions(positions);
    TemporalReferenceFrame temporalReferenceFrame = new TemporalReferenceFrame(new TemporalCRSType("temporalReference", null, null, "calendrier gregorien en heure d'ete", new TemporalCSRefType("urn:x-brgm:temporalCS:gregorian"), new TemporalDatumRefType("urn:x-brgm:temporalDatum:UniversalTime")));
    system.setTemporalReferenceFrame(temporalReferenceFrame);
    List<Connection> connecL = new ArrayList<Connection>();
    connecL.add(new Connection("inputTolevel", new Link(null, new LinkRef("this/inputs/level"), new LinkRef("piezometer/inputs/level"))));
    Connection c2 = new Connection("depthToOutput", new Link(null, new LinkRef("piezometer/outputs/depth"), new LinkRef("this/outputs/piezoMeasurements/depth")));
    ArrayLink alink = new ArrayLink();
    LinkRef sa = new LinkRef("piezometer/outputs/depth");
    alink.setSourceArray(sa);
    LinkRef si = new LinkRef("this/outputs/piezoMeasurements/depth");
    alink.setSourceIndex(si);
    LinkRef da = new LinkRef("this/outputs/piezoMeasurements/depth");
    alink.setDestinationArray(da);
    LinkRef di = new LinkRef("this/outputs/piezoMeasurements/depth");
    alink.getDestinationIndex().add(di);
    c2.setArrayLink(alink);
    connecL.add(c2);
    ConnectionList connectionList = new ConnectionList(connecL);
    Connections connections = new Connections(connectionList);
    system.setConnections(connections);
    LayerPropertyType applicationLayer = new LayerPropertyType(new Category("urn:ogc:def:protocol:applicationLink", "urn:x-brgm:def:protocol:hydrasIRIS"));
    LayerPropertyType dataLinkLayer = new LayerPropertyType(new Category("urn:ogc:def:protocol:dataLink", "urn:x-brgm:def:dataLink:RTC"));
    InterfaceDefinition definition = new InterfaceDefinition(null, applicationLayer, dataLinkLayer);
    Interface i1 = new Interface("RS-232", definition);
    List<Interface> interfaceL = new ArrayList<Interface>();
    interfaceL.add(i1);
    InterfaceList interfaceList = new InterfaceList(null, interfaceL);
    Interfaces interfaces = new Interfaces(interfaceList);
    system.setInterfaces(interfaces);
    Rights rights = new Rights(true, true, new Documentation(new Document("Donnees sous copyright du BRGM")));
    LegalConstraint legalConstraint = new LegalConstraint(rights);
    system.setLegalConstraint(legalConstraint);
    system.setDescription("information about the piezometer");
    system.setName(new DefaultIdentifier("Piezometer Test"));
    member.setProcess(sml100Factory.createSystem(system));
    SensorML expectedResult = new SensorML("1.0", Arrays.asList(member));
    assertEquals(result.getMember().size(), 1);
    assertTrue(result.getMember().get(0).getProcess() != null);
    assertTrue(result.getMember().get(0).getProcess().getValue() instanceof SystemType);
    SystemType resultProcess = (SystemType) result.getMember().get(0).getProcess().getValue();
    assertEquals(resultProcess.getCapabilities().size(), system.getCapabilities().size());
    assertTrue(resultProcess.getCapabilities().get(0).getAbstractDataRecord().getValue() instanceof DataRecordType);
    DataRecordType resultRecord = (DataRecordType) resultProcess.getCapabilities().get(0).getAbstractDataRecord().getValue();
    DataRecordType expRecord = (DataRecordType) system.getCapabilities().get(0).getAbstractDataRecord().getValue();
    assertEquals(resultRecord.getField().get(0), expRecord.getField().get(0));
    assertEquals(resultRecord.getField().get(1), expRecord.getField().get(1));
    assertEquals(resultRecord.getField(), expRecord.getField());
    assertEquals(resultProcess.getCapabilities().get(0).getAbstractDataRecord().getValue(), system.getCapabilities().get(0).getAbstractDataRecord().getValue());
    assertEquals(resultProcess.getCapabilities().get(0), system.getCapabilities().get(0));
    assertEquals(resultProcess.getCapabilities(), system.getCapabilities());
    assertTrue(resultProcess.getContact().size() == 2);
    assertEquals(resultProcess.getContact().get(0).getContactList(), system.getContact().get(0).getContactList());
    assertEquals(resultProcess.getContact().get(0).getResponsibleParty().getContactInfo(), system.getContact().get(0).getResponsibleParty().getContactInfo());
    assertEquals(resultProcess.getContact().get(0).getResponsibleParty().getOrganizationName(), system.getContact().get(0).getResponsibleParty().getOrganizationName());
    assertEquals(resultProcess.getContact().get(0).getResponsibleParty(), system.getContact().get(0).getResponsibleParty());
    assertEquals(resultProcess.getContact().get(0), system.getContact().get(0));
    assertEquals(resultProcess.getContact(), system.getContact());
    assertTrue(resultProcess.getClassification().size() == 1);
    assertTrue(resultProcess.getClassification().get(0).getClassifierList().getClassifier().size() == 10);
    assertEquals(resultProcess.getClassification().get(0).getClassifierList().getClassifier().get(0).getTerm(), system.getClassification().get(0).getClassifierList().getClassifier().get(0).getTerm());
    assertEquals(resultProcess.getClassification().get(0).getClassifierList().getClassifier().get(0), system.getClassification().get(0).getClassifierList().getClassifier().get(0));
    assertEquals(resultProcess.getClassification().get(0).getClassifierList().getClassifier(), system.getClassification().get(0).getClassifierList().getClassifier());
    assertEquals(resultProcess.getClassification().get(0).getClassifierList(), system.getClassification().get(0).getClassifierList());
    assertEquals(resultProcess.getClassification().get(0), system.getClassification().get(0));
    assertEquals(resultProcess.getClassification(), system.getClassification());
    assertEquals(resultProcess.getIdentification(), system.getIdentification());
    assertEquals(resultProcess.getValidTime(), system.getValidTime());
    assertEquals(resultProcess.getParameters(), system.getParameters());
    assertEquals(resultProcess.getInputs().getInputList().getInput(), system.getInputs().getInputList().getInput());
    assertEquals(resultProcess.getInputs().getInputList(), system.getInputs().getInputList());
    assertEquals(resultProcess.getInputs(), system.getInputs());
    assertEquals(resultProcess.getOutputs(), system.getOutputs());
    assertEquals(resultProcess.getSMLLocation(), system.getSMLLocation());
    assertEquals(resultProcess.getPosition(), system.getPosition());
    assertEquals(resultProcess.getSpatialReferenceFrame(), system.getSpatialReferenceFrame());
    assertEquals(resultProcess.getDocumentation(), system.getDocumentation());
    assertEquals(resultProcess.getCharacteristics(), system.getCharacteristics());
    assertEquals(resultProcess.getComponents(), system.getComponents());
    assertEquals(resultProcess.getPositions(), system.getPositions());
    assertEquals(resultProcess.getTemporalReferenceFrame(), system.getTemporalReferenceFrame());
    assertEquals(resultProcess.getConnections().getConnectionList().getConnection().get(0), system.getConnections().getConnectionList().getConnection().get(0));
    assertEquals(resultProcess.getConnections().getConnectionList().getConnection().get(1), system.getConnections().getConnectionList().getConnection().get(1));
    assertEquals(resultProcess.getConnections().getConnectionList().getConnection(), system.getConnections().getConnectionList().getConnection());
    assertEquals(resultProcess.getConnections().getConnectionList(), system.getConnections().getConnectionList());
    assertEquals(resultProcess.getConnections(), system.getConnections());
    assertEquals(resultProcess.getInterfaces(), system.getInterfaces());
    assertEquals(resultProcess.getLegalConstraint(), system.getLegalConstraint());
    assertEquals(resultProcess.getKeywords(), system.getKeywords());
    assertEquals(resultProcess.getId(), system.getId());
    assertEquals(resultProcess.getName(), system.getName());
    assertEquals(resultProcess, system);
    assertEquals(expectedResult.getMember().get(0), result.getMember().get(0));
    assertEquals(expectedResult.getMember(), result.getMember());
    assertEquals(expectedResult, result);
    SensorMLMarshallerPool.getInstance().recycle(unmarshaller);
}

Example 3 with Position

use of ca.nrc.cadc.caom2.Position in project geotoolkit by Geomatys.

the class SmlXMLBindingTest method DataSourceMarshalingTest.

@Test
public void DataSourceMarshalingTest() throws Exception {
    final SystemType system = new SystemType();
    final List<DataComponentPropertyType> fields = new ArrayList<>();
    fields.add(DataComponentPropertyType.LATITUDE_FIELD);
    fields.add(DataComponentPropertyType.LONGITUDE_FIELD);
    fields.add(DataComponentPropertyType.TIME_FIELD);
    final DataRecordType posRecord = new DataRecordType(null, fields);
    final DataBlockDefinitionType definition = new DataBlockDefinitionType(null, Arrays.asList(posRecord), TextBlockType.DEFAULT_ENCODING);
    final DataDefinition dataDefinition = new DataDefinition(definition);
    final org.geotoolkit.sml.xml.v101.Values trajValues = new org.geotoolkit.sml.xml.v101.Values();
    trajValues.setAny("test");
    final DataSourceType datasource = new DataSourceType(dataDefinition, trajValues, null);
    final Position pos = new Position(null, datasource);
    system.setPosition(pos);
    DataSourceType expds = (DataSourceType) pos.getAbstractProcess();
    DataSourceType resds = (DataSourceType) system.getPosition().getAbstractProcess();
    assertEquals(expds.getDataDefinition(), resds.getDataDefinition());
    assertEquals(expds, resds);
    assertEquals(pos.getAbstractProcess(), system.getPosition().getAbstractProcess());
    assertEquals(pos.getPosition(), system.getPosition().getPosition());
    assertEquals(pos, system.getPosition());
    final SensorML sml = new SensorML("1.0.1", Arrays.asList(new SensorML.Member(system)));
    Marshaller m = SensorMLMarshallerPool.getInstance().acquireMarshaller();
    ObjectFactory factory = new ObjectFactory();
    // m.marshal(factory.createPosition(pos), System.out);
    // m.marshal(factory.createSystem(system), System.out);
    // m.marshal(sml, System.out);
    SensorMLMarshallerPool.getInstance().recycle(m);
}

Example 4 with Position

use of ca.nrc.cadc.caom2.Position in project dishevelled-bio by heuermh.

the class Gfa1ToGfa2 method call.

@Override
public Integer call() throws Exception {
    PrintWriter writer = null;
    try {
        writer = writer(outputGfa2File);
        final PrintWriter w = writer;
        Gfa1Reader.stream(reader(inputGfa1File), new Gfa1Adapter() {

            @Override
            public boolean header(final Header header) {
                // convert VN:Z:1.0 to VN:Z:2.0 annotation if present
                if (header.getAnnotations().containsKey("VN")) {
                    if (!"1.0".equals(header.getAnnotations().get("VN").getValue())) {
                        throw new RuntimeException("cannot convert input as GFA 1.0, was " + header.getAnnotations().get("VN").getValue());
                    }
                    Map<String, Annotation> annotations = new HashMap<String, Annotation>();
                    annotations.put("VN", new Annotation("VN", "Z", "2.0"));
                    for (Annotation annotation : header.getAnnotations().values()) {
                        if (!"VN".equals(annotation.getName())) {
                            annotations.put(annotation.getName(), annotation);
                        }
                    }
                    Gfa2Writer.write(new org.dishevelled.bio.assembly.gfa2.Header(annotations), w);
                } else {
                    Gfa2Writer.write(new org.dishevelled.bio.assembly.gfa2.Header(header.getAnnotations()), w);
                }
                return true;
            }

            @Override
            public boolean segment(final Segment segment) {
                if (segment.getSequence() != null) {
                    Gfa2Writer.write(new org.dishevelled.bio.assembly.gfa2.Segment(segment.getId(), segment.getSequence().length(), segment.getSequence(), segment.getAnnotations()), w);
                } else if (segment.getAnnotations().containsKey("LN")) {
                    Gfa2Writer.write(new org.dishevelled.bio.assembly.gfa2.Segment(segment.getId(), Integer.parseInt(segment.getAnnotations().get("LN").getValue()), segment.getSequence(), segment.getAnnotations()), w);
                } else {
                    Gfa2Writer.write(new org.dishevelled.bio.assembly.gfa2.Segment(segment.getId(), 0, segment.getSequence(), segment.getAnnotations()), w);
                }
                return true;
            }

            @Override
            public boolean link(final Link link) {
                Position unknown = new Position(0, false);
                Alignment alignment = link.getOverlap() == null ? null : Alignment.valueOf(link.getOverlap());
                Gfa2Writer.write(new org.dishevelled.bio.assembly.gfa2.Edge(null, toGfa2Reference(link.getSource()), toGfa2Reference(link.getTarget()), unknown, unknown, unknown, unknown, alignment, link.getAnnotations()), w);
                return true;
            }

            @Override
            public boolean containment(final Containment containment) {
                Position unknown = new Position(0, false);
                Position targetStart = new Position(containment.getPosition(), false);
                Alignment alignment = containment.getOverlap() == null ? null : Alignment.valueOf(containment.getOverlap());
                Gfa2Writer.write(new org.dishevelled.bio.assembly.gfa2.Edge(null, toGfa2Reference(containment.getContainer()), toGfa2Reference(containment.getContained()), unknown, unknown, targetStart, unknown, alignment, containment.getAnnotations()), w);
                return true;
            }

            @Override
            public boolean path(final Path path) {
                Gfa2Writer.write(new org.dishevelled.bio.assembly.gfa2.Path(path.getName(), toGfa2References(path.getSegments()), path.getAnnotations()), w);
                return true;
            }
        });
        return 0;
    } finally {
        try {
            writer.close();
        } catch (Exception e) {
        // empty
        }
    }
}

Example 5 with Position

use of ca.nrc.cadc.caom2.Position in project webanno by webanno.

the class AgreementUtils method configurationSetsWithItemsToCsv.

private static void configurationSetsWithItemsToCsv(CSVPrinter aOut, AgreementResult aAgreement, List<ConfigurationSet> aSets) throws IOException {
    List<String> headers = new ArrayList<>(asList("Type", "Collection", "Document", "Layer", "Feature", "Position"));
    headers.addAll(aAgreement.getCasGroupIds());
    aOut.printRecord(headers);
    int i = 0;
    for (ICodingAnnotationItem item : aAgreement.getStudy().getItems()) {
        Position pos = aSets.get(i).getPosition();
        List<String> values = new ArrayList<>();
        values.add(pos.getClass().getSimpleName());
        values.add(pos.getCollectionId());
        values.add(pos.getDocumentId());
        values.add(pos.getType());
        values.add(aAgreement.getFeature());
        values.add(aSets.get(i).getPosition().toMinimalString());
        for (IAnnotationUnit unit : item.getUnits()) {
            values.add(String.valueOf(unit.getCategory()));
        }
        aOut.printRecord(values);
        i++;
    }
}