Examples with DisplayAdapterService cbit.image.DisplayAdapterService used on opensource projects

Example 6 with DisplayAdapterService

use of cbit.image.DisplayAdapterService in project vcell by virtualcell.

the class GeometryViewer method setColorMap.

/**
 * Comment
 */
private void setColorMap() {
    DisplayAdapterService displayAdapterService = getImagePlaneManagerPanel1().getDisplayAdapterServicePanel().getDisplayAdapterService();
    displayAdapterService.addColorModelForIndexes(DisplayAdapterService.createContrastColorModel(), "Contrast");
    displayAdapterService.setActiveColorModelID("Contrast");
}

Example 7 with DisplayAdapterService

use of cbit.image.DisplayAdapterService in project vcell by virtualcell.

the class DisplayImageOp method displayImage.

public void displayImage(final Image image, String title, WindowListener listener) {
    final ImagePlaneManagerPanel imagePanel = new ImagePlaneManagerPanel();
    double[] doublePixels = image.getDoublePixels();
    double minPixel = Double.MAX_VALUE;
    double maxPixel = -Double.MAX_VALUE;
    for (int i = 0; i < doublePixels.length; i++) {
        double pixel = doublePixels[i];
        doublePixels[i] = pixel;
        minPixel = Math.min(minPixel, pixel);
        maxPixel = Math.max(maxPixel, pixel);
    }
    Range newRange = new Range(minPixel, maxPixel);
    SourceDataInfo source = new SourceDataInfo(SourceDataInfo.RAW_VALUE_TYPE, doublePixels, image.getExtent(), image.getOrigin(), newRange, 0, image.getNumX(), 1, image.getNumY(), image.getNumX(), image.getNumZ(), image.getNumX() * image.getNumY());
    imagePanel.setDisplayAdapterServicePanelVisible(true);
    imagePanel.setCurveValueProvider(new CurveValueProvider() {

        @Override
        public void curveAdded(Curve curve) {
            System.out.println("called curveAdded(" + curve + "), do nothing for now");
        }

        @Override
        public void curveRemoved(Curve curve) {
            System.out.println("called curveRemoved(" + curve + ")");
        }

        @Override
        public String getCurveValue(CurveSelectionInfo csi) {
            System.out.println("called getCurveValue(CurveSelectionInfo " + csi);
            return null;
        }

        @Override
        public CurveSelectionInfo getInitalCurveSelection(int tool, Coordinate wc) {
            System.out.println("called getInitialCurveSelection(tool=" + tool + ", coord=" + wc + ")");
            return null;
        }

        @Override
        public boolean isAddControlPointOK(int tool, Coordinate wc, Curve addedToThisCurve) {
            System.out.println("called isAddControlPointOK");
            return true;
        }

        @Override
        public boolean providesInitalCurve(int tool, Coordinate wc) {
            System.out.println("called providesInitialCurve(tool=" + tool + " (TOOL_LINE=" + CurveEditorTool.TOOL_LINE + "), coord=" + wc);
            return false;
        }

        @Override
        public void setDescription(Curve curve) {
            System.out.println("called setDescription(" + curve + ")");
            curve.setDescription(CurveValueProvider.DESCRIPTION_VOLUME);
        }

        @Override
        public CurveSelectionInfo findChomboCurveSelectionInfoForPoint(CoordinateIndex ci) {
            System.out.println("called find ChomboCurveSelectionInfoForPoint(coord=" + ci + ")");
            return null;
        }
    });
    DisplayAdapterService das = imagePanel.getDisplayAdapterServicePanel().getDisplayAdapterService();
    das.setValueDomain(null);
    das.addColorModelForValues(DisplayAdapterService.createGrayColorModel(), DisplayAdapterService.createGraySpecialColors(), DisplayAdapterService.GRAY);
    das.addColorModelForValues(DisplayAdapterService.createBlueRedColorModel(), DisplayAdapterService.createBlueRedSpecialColors(), DisplayAdapterService.BLUERED);
    das.setActiveColorModelID(DisplayAdapterService.BLUERED);
    final JFrame jframe = new JFrame();
    jframe.setTitle(title);
    JPanel panel = new JPanel();
    panel.setLayout(new GridBagLayout());
    GridBagConstraints imageConstraints = new GridBagConstraints();
    imageConstraints.gridx = 0;
    imageConstraints.gridy = 0;
    imageConstraints.weightx = 1.0;
    imageConstraints.weighty = 1.0;
    imageConstraints.fill = GridBagConstraints.BOTH;
    panel.add(imagePanel, imageConstraints);
    JButton plotButton = new JButton("plot");
    plotButton.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent e) {
            try {
                Curve curve = imagePanel.getCurveRenderer().getSelection().getCurve();
                VariableType variableType = VariableType.VOLUME;
                Curve samplerCurve = curve.getSampledCurve();
                samplerCurve.setDescription(curve.getDescription());
                VCImage vcImage = new VCImageUncompressed(null, new byte[image.getISize().getXYZ()], image.getExtent(), image.getISize().getX(), image.getISize().getY(), image.getISize().getZ());
                int dimension = 1 + (image.getISize().getY() > 0 ? 1 : 0) + (image.getISize().getZ() > 0 ? 1 : 0);
                RegionImage regionImage = new RegionImage(vcImage, dimension, image.getExtent(), image.getOrigin(), RegionImage.NO_SMOOTHING);
                CartesianMesh mesh = CartesianMesh.createSimpleCartesianMesh(image.getOrigin(), image.getExtent(), image.getISize(), regionImage);
                SpatialSelectionVolume ssVolume = new SpatialSelectionVolume(new CurveSelectionInfo(samplerCurve), variableType, mesh);
                String varName = "var";
                SymbolTableEntry[] symbolTableEntries = new SymbolTableEntry[] { new VolVariable(varName, null) };
                PlotData plotData = getLineScan(ssVolume, image, mesh);
                PlotPane plotPane = new PlotPane();
                DataSymbolMetadataResolver resolver = null;
                Plot2D plot2D = new Plot2D(symbolTableEntries, resolver, new String[] { varName }, new PlotData[] { plotData }, new String[] { "Values along curve", "Distance (\u00b5m)", "[" + varName + "]" });
                plotPane.setPlot2D(plot2D);
                DialogUtils.showComponentCloseDialog(jframe, plotPane, "plot");
            } catch (ImageException | IOException | DataAccessException | MathException e1) {
                e1.printStackTrace();
            }
        }
    });
    GridBagConstraints plotButtonConstraints = new GridBagConstraints();
    plotButtonConstraints.gridx = 0;
    plotButtonConstraints.gridy = 1;
    panel.add(plotButton, plotButtonConstraints);
    jframe.getContentPane().add(panel);
    jframe.setSize(500, 500);
    jframe.addWindowListener(listener);
    jframe.setVisible(true);
    imagePanel.setSourceDataInfo(source);
}

Example 8 with DisplayAdapterService

use of cbit.image.DisplayAdapterService in project vcell by virtualcell.

the class DisplayAdapterServicePanel method setDisplayAdapterService.

public void setDisplayAdapterService(DisplayAdapterService newValue) {
    if (ivjDisplayAdapterService == newValue) {
        return;
    }
    DisplayAdapterService oldValue = ivjDisplayAdapterService;
    if (oldValue != null) {
        oldValue.removePropertyChangeListener(ivjEventHandler);
    }
    ivjDisplayAdapterService = newValue;
    if (newValue != null) {
        newValue.addPropertyChangeListener(ivjEventHandler);
        updateColorModelRadioButtons();
        getAutoScaleCheckbox().setSelected(getDisplayAdapterService().getAutoScale());
        updateColorMapDisplay();
        getColorMapButtonGroup().setSelection(String.valueOf(getDisplayAdapterService().getActiveColorModelID()));
        setvalueDomain1(getDisplayAdapterService().getValueDomain());
        setactiveScaleRange1(getDisplayAdapterService().getActiveScaleRange());
        specialColorsChanged();
    }
}

Example 9 with DisplayAdapterService

use of cbit.image.DisplayAdapterService in project vcell by virtualcell.

the class PDEDataContextPanel method setdisplayAdapterService1.

/**
 * Set the displayAdapterService1 to a new value.
 * @param newValue cbit.image.DisplayAdapterService
 */
/* WARNING: THIS METHOD WILL BE REGENERATED. */
public void setdisplayAdapterService1(DisplayAdapterService newValue) {
    if (ivjdisplayAdapterService1 != newValue) {
        try {
            DisplayAdapterService oldValue = getdisplayAdapterService1();
            ivjdisplayAdapterService1 = newValue;
            connEtoC2(ivjdisplayAdapterService1);
            firePropertyChange("displayAdapterService1", oldValue, newValue);
        // user code begin {1}
        // user code end
        } catch (java.lang.Throwable ivjExc) {
            // user code begin {2}
            // user code end
            handleException(ivjExc);
        }
    }
    ;
// user code begin {3}
// user code end
}

Example 10 with DisplayAdapterService

use of cbit.image.DisplayAdapterService in project vcell by virtualcell.

the class PDEExportDataPanel method setDisplayAdapterService.

/**
 * Sets the displayAdapterService property (cbit.image.DisplayAdapterService) value.
 * @param displayAdapterService The new value for the property.
 * @see #getDisplayAdapterService
 */
public void setDisplayAdapterService(DisplayAdapterService displayAdapterService) {
    DisplayAdapterService oldValue = fieldDisplayAdapterService;
    fieldDisplayAdapterService = displayAdapterService;
    firePropertyChange("displayAdapterService", oldValue, displayAdapterService);
}