Examples with NodeReference cbit.vcell.model.NodeReference used on opensource projects

Example 11 with NodeReference

use of cbit.vcell.model.NodeReference in project vcell by virtualcell.

the class Xmlproducer method getXML.

/**
 * This method returns a XML representation of a diagram object type.
 * Creation date: (2/27/2001 5:13:26 PM)
 * @return Element
 * @param param cbit.vcell.model.Diagram
 */
private Element getXML(Diagram param) {
    Element diagram = new Element(XMLTags.DiagramTag);
    // add attributes
    diagram.setAttribute(XMLTags.NameAttrTag, mangle(param.getName()));
    diagram.setAttribute(XMLTags.StructureAttrTag, mangle(param.getStructure().getName()));
    // Add NodeReferences subelements
    for (NodeReference node : param.getNodeFullList()) {
        diagram.addContent(getXML(node));
    }
    for (NodeReference node : param.getNodeMoleculeList()) {
        diagram.addContent(getXML(node));
    }
    for (NodeReference node : param.getNodeRuleList()) {
        diagram.addContent(getXML(node));
    }
    return diagram;
}