Examples with SortDataReferenceHelper cbit.vcell.modelopt.gui.MultisourcePlotListModel.SortDataReferenceHelper used on opensource projects

Example 1 with SortDataReferenceHelper

use of cbit.vcell.modelopt.gui.MultisourcePlotListModel.SortDataReferenceHelper in project vcell by virtualcell.

the class ParameterEstimationRunTaskPanel method plot.

private void plot() {
    try {
        java.util.Vector<DataSource> dataSourceList = new java.util.Vector<DataSource>();
        java.util.Vector<String> nameVector = new java.util.Vector<String>();
        ModelOptimizationSpec modelOptimizationSpec = parameterEstimationTask.getModelOptimizationSpec();
        final ReferenceDataMappingSpec[] mappingSpecs = modelOptimizationSpec.getReferenceDataMappingSpecs();
        int timeIndex = modelOptimizationSpec.getReferenceDataTimeColumnIndex();
        ReferenceData referenceData = modelOptimizationSpec.getReferenceData();
        if (referenceData != null) {
            dataSourceList.add(new DataSource.DataSourceReferenceData("EXPT", timeIndex, referenceData));
            String[] refColumnNames = referenceData.getColumnNames();
            for (int i = 0; i < refColumnNames.length; i++) {
                if (i == timeIndex) {
                    continue;
                }
                nameVector.add(refColumnNames[i]);
                break;
            }
        }
        ParameterEstimationTaskSimulatorIDA parestSimulator = new ParameterEstimationTaskSimulatorIDA();
        ODESolverResultSet odeSolverResultSet = parestSimulator.getOdeSolverResultSet(parameterEstimationTask);
        if (odeSolverResultSet != null) {
            dataSourceList.add(new DataSource.DataSourceRowColumnResultSet("EST", odeSolverResultSet));
            if (mappingSpecs != null) {
                for (int i = 0; i < mappingSpecs.length; i++) {
                    if (i == timeIndex) {
                        continue;
                    }
                    Variable var = parameterEstimationTask.getMathSymbolMapping().getVariable(mappingSpecs[i].getModelObject());
                    nameVector.add(var.getName());
                    break;
                }
            }
        }
        DataSource[] dataSources = (DataSource[]) BeanUtils.getArray(dataSourceList, DataSource.class);
        MultisourcePlotPane multisourcePlotPane = new MultisourcePlotPane();
        multisourcePlotPane.setGroupingListSorter(new Comparator<SortDataReferenceHelper>() {

            @Override
            public int compare(SortDataReferenceHelper o1, SortDataReferenceHelper o2) {
                DataSource ds01 = o1.dataReference.getDataSource();
                DataSource ds02 = o2.dataReference.getDataSource();
                // System.out.println(ds01.getClass().getSimpleName()+" "+o1.dataReference.getIdentifier()+" "+ds02.getClass().getSimpleName()+" "+o2.dataReference.getIdentifier());
                if (ds01 instanceof DataSource.DataSourceReferenceData) {
                    if (ds02 instanceof DataSource.DataSourceReferenceData) {
                        // both reference data, sort names
                        ReferenceDataMappingSpec mspec01 = null;
                        ReferenceDataMappingSpec mspec02 = null;
                        for (ReferenceDataMappingSpec rdMappingSpec : mappingSpecs) {
                            // Variable var = parameterEstimationTask.getMathSymbolMapping().getVariable(rdMappingSpec.getModelObject());
                            if (rdMappingSpec.getModelObject() instanceof ReservedSymbol) {
                                continue;
                            }
                            if (o1.dataReference.getIdentifier().equals(rdMappingSpec.getReferenceDataColumnName())) {
                                mspec01 = rdMappingSpec;
                                o1.setReferenceDataMappingSpec(rdMappingSpec);
                            } else if (o2.dataReference.getIdentifier().equals(rdMappingSpec.getReferenceDataColumnName())) {
                                mspec02 = rdMappingSpec;
                                o2.setReferenceDataMappingSpec(rdMappingSpec);
                            }
                        }
                        if (mspec01 == null && mspec02 == null) {
                            return o1.dataReference.getIdentifier().compareToIgnoreCase(o2.dataReference.getIdentifier());
                        } else if (mspec01 != null && mspec02 != null) {
                            return mspec01.getReferenceDataColumnName().compareToIgnoreCase(mspec02.getReferenceDataColumnName());
                        } else if (mspec01 != null && mspec02 == null) {
                            return -1;
                        } else {
                            return 1;
                        }
                    } else {
                        // compare ref to ode
                        ReferenceDataMappingSpec mspec01 = null;
                        ReferenceDataMappingSpec mspec02 = null;
                        for (ReferenceDataMappingSpec rdMappingSpec : mappingSpecs) {
                            Variable var = parameterEstimationTask.getMathSymbolMapping().getVariable(rdMappingSpec.getModelObject());
                            if (rdMappingSpec.getModelObject() instanceof ReservedSymbol) {
                                continue;
                            }
                            if (o1.dataReference.getIdentifier().equals(rdMappingSpec.getReferenceDataColumnName())) {
                                mspec01 = rdMappingSpec;
                                o1.setReferenceDataMappingSpec(rdMappingSpec);
                            } else if (o2.dataReference.getIdentifier().equals(var.getName())) {
                                mspec02 = rdMappingSpec;
                                o2.setReferenceDataMappingSpec(rdMappingSpec);
                            }
                        }
                        if (mspec01 == null && mspec02 == null) {
                            return -1;
                        } else if (mspec01 != null && mspec02 == null) {
                            return -1;
                        } else if (mspec02 != null && mspec01 == null) {
                            return 1;
                        } else {
                            // BeanUtils.forceStringSize(mspec02.getReferenceDataColumnName(), 25, " ", true));
                            return mspec01.getReferenceDataColumnName().compareToIgnoreCase(mspec02.getReferenceDataColumnName());
                        }
                    }
                } else {
                    if (ds02 instanceof DataSource.DataSourceRowColumnResultSet) {
                        // both OdeSolverResultSet data, sort names
                        ReferenceDataMappingSpec mspec01 = null;
                        ReferenceDataMappingSpec mspec02 = null;
                        for (ReferenceDataMappingSpec rdMappingSpec : mappingSpecs) {
                            Variable var = parameterEstimationTask.getMathSymbolMapping().getVariable(rdMappingSpec.getModelObject());
                            if (rdMappingSpec.getModelObject() instanceof ReservedSymbol) {
                                continue;
                            }
                            if (o1.dataReference.getIdentifier().equals(var.getName())) {
                                mspec01 = rdMappingSpec;
                                o1.setReferenceDataMappingSpec(rdMappingSpec);
                            } else if (o2.dataReference.getIdentifier().equals(var.getName())) {
                                mspec02 = rdMappingSpec;
                                o2.setReferenceDataMappingSpec(rdMappingSpec);
                            }
                        }
                        if (mspec01 == null && mspec02 == null) {
                            return o1.dataReference.getIdentifier().compareToIgnoreCase(o2.dataReference.getIdentifier());
                        } else if (mspec01 != null && mspec02 != null) {
                            return mspec01.getReferenceDataColumnName().compareToIgnoreCase(mspec02.getReferenceDataColumnName());
                        } else if (mspec01 != null && mspec02 == null) {
                            return -1;
                        } else {
                            return 1;
                        }
                    } else {
                        // compare ode to ref
                        ReferenceDataMappingSpec mspec01 = null;
                        ReferenceDataMappingSpec mspec02 = null;
                        for (ReferenceDataMappingSpec rdMappingSpec : mappingSpecs) {
                            Variable var = parameterEstimationTask.getMathSymbolMapping().getVariable(rdMappingSpec.getModelObject());
                            if (rdMappingSpec.getModelObject() instanceof ReservedSymbol) {
                                continue;
                            }
                            if (o2.dataReference.getIdentifier().equals(rdMappingSpec.getReferenceDataColumnName())) {
                                mspec02 = rdMappingSpec;
                                o2.setReferenceDataMappingSpec(rdMappingSpec);
                            } else if (o1.dataReference.getIdentifier().equals(var.getName())) {
                                mspec01 = rdMappingSpec;
                                o1.setReferenceDataMappingSpec(rdMappingSpec);
                            }
                        }
                        if (mspec01 == null && mspec02 == null) {
                            return 1;
                        } else if (mspec01 != null && mspec02 == null) {
                            return -1;
                        } else if (mspec02 != null && mspec01 == null) {
                            return 1;
                        } else {
                            // BeanUtils.forceStringSize(mspec02.getReferenceDataColumnName(), 25, " ", true));
                            return mspec01.getReferenceDataColumnName().compareToIgnoreCase(mspec02.getReferenceDataColumnName());
                        }
                    }
                }
            }
        });
        multisourcePlotPane.setDataSources(dataSources);
        String[] nameArray = new String[nameVector.size()];
        nameArray = (String[]) BeanUtils.getArray(nameVector, String.class);
        multisourcePlotPane.select(nameArray);
        DialogUtils.showComponentCloseDialog(JOptionPane.getFrameForComponent(this), multisourcePlotPane, "Data Plot");
    } catch (Exception e) {
        e.printStackTrace(System.out);
    }
}

Example 2 with SortDataReferenceHelper

use of cbit.vcell.modelopt.gui.MultisourcePlotListModel.SortDataReferenceHelper in project vcell by virtualcell.

the class MultisourcePlotPane method getJList1.

/**
 * Return the JList1 property value.
 * @return javax.swing.JList
 */
/* WARNING: THIS METHOD WILL BE REGENERATED. */
private javax.swing.JList<DataReference> getJList1() {
    if (ivjJList1 == null) {
        try {
            ivjJList1 = new javax.swing.JList<DataReference>();
            ivjJList1.setName("JList1");
            ivjJList1.setBounds(0, 0, 255, 480);
            ivjJList1.setCellRenderer(new ListCellRenderer<DataReference>() {

                DefaultListCellRenderer defaultListCellRenderer = new DefaultListCellRenderer();

                private Boolean isEvenMatchedSet(int index0) {
                    if (ivjJList1.getModel().getSize() == 0) {
                        return null;
                    }
                    if (getmultisourcePlotListModel().getSortedDataReferences().get(index0).matchCount == null) {
                        // create matched set group counts (this happens 1 time)
                        int masterMatchCount = 0;
                        for (int i = 0; i < ivjJList1.getModel().getSize(); i++) {
                            DataSource dataSource = getmultisourcePlotListModel().getSortedDataReferences().get(i).dataReference.getDataSource();
                            if (dataSource instanceof DataSource.DataSourceReferenceData) {
                                if (i != ivjJList1.getModel().getSize() - 1) {
                                    SortDataReferenceHelper mySortDataReferenceHelper = getmultisourcePlotListModel().getSortedDataReferences().get(i);
                                    SortDataReferenceHelper potentialMatchSortDataReferenceHelper = getmultisourcePlotListModel().getSortedDataReferences().get(i + 1);
                                    if (potentialMatchSortDataReferenceHelper.getReferenceDataMappingSpec() != null && mySortDataReferenceHelper != null && potentialMatchSortDataReferenceHelper.getReferenceDataMappingSpec().getReferenceDataColumnName().equals(mySortDataReferenceHelper.dataReference.getIdentifier())) {
                                        mySortDataReferenceHelper.matchCount = masterMatchCount;
                                        potentialMatchSortDataReferenceHelper.matchCount = masterMatchCount;
                                        masterMatchCount++;
                                    } else {
                                        mySortDataReferenceHelper.matchCount = -1;
                                    }
                                } else {
                                    getmultisourcePlotListModel().getSortedDataReferences().get(i).matchCount = -1;
                                }
                            } else if (getmultisourcePlotListModel().getSortedDataReferences().get(i).matchCount == null) {
                                getmultisourcePlotListModel().getSortedDataReferences().get(i).matchCount = -1;
                            }
                        }
                    }
                    if (getmultisourcePlotListModel().getSortedDataReferences().get(index0).matchCount == -1) {
                        // not part of matched set
                        return null;
                    }
                    return getmultisourcePlotListModel().getSortedDataReferences().get(index0).matchCount % 2 == 0;
                }

                @Override
                public Component getListCellRendererComponent(JList<? extends DataReference> list, DataReference value, int index, boolean isSelected, boolean cellHasFocus) {
                    Component comp = defaultListCellRenderer.getListCellRendererComponent(list, value, index, isSelected, cellHasFocus);
                    try {
                        if (bGroupingListSorter && comp instanceof JLabel) {
                            if (isSelected) {
                                comp.setBackground(getJList1().getSelectionBackground());
                                comp.setForeground(getJList1().getSelectionForeground());
                            } else {
                                Boolean evenMatch = isEvenMatchedSet(index);
                                comp.setBackground(evenMatch == null || evenMatch ? getJList1().getBackground() : DefaultScrollTableCellRenderer.everyOtherRowColor);
                                comp.setForeground(getJList1().getForeground());
                            }
                        }
                    } catch (Exception e) {
                        e.printStackTrace();
                    }
                    return comp;
                }
            });
        // user code begin {1}
        // user code end
        } catch (java.lang.Throwable ivjExc) {
            // user code begin {2}
            // user code end
            handleException(ivjExc);
        }
    }
    return ivjJList1;
}