Examples with AutoCompleteSymbolFilter cbit.vcell.parser.AutoCompleteSymbolFilter used on opensource projects

Example 1 with AutoCompleteSymbolFilter

use of cbit.vcell.parser.AutoCompleteSymbolFilter in project vcell by virtualcell.

the class GeometrySubVolumeTableModel method setGeometry.

/**
 * Sets the geometry property (cbit.vcell.geometry.Geometry) value.
 * @param geometry The new value for the property.
 * @see #getGeometry
 */
public void setGeometry(Geometry geometry) {
    if (fieldGeometry == geometry) {
        return;
    }
    Geometry oldValue = fieldGeometry;
    if (oldValue != null) {
        oldValue.getGeometrySpec().removePropertyChangeListener(this);
        for (SubVolume sv : oldValue.getGeometrySpec().getSubVolumes()) {
            sv.removePropertyChangeListener(this);
        }
    }
    fieldGeometry = geometry;
    if (fieldGeometry != null) {
        fieldGeometry.getGeometrySpec().addPropertyChangeListener(this);
        for (SubVolume sv : fieldGeometry.getGeometrySpec().getSubVolumes()) {
            sv.addPropertyChangeListener(this);
        }
        autoCompleteSymbolFilter = new AutoCompleteSymbolFilter() {

            public boolean accept(SymbolTableEntry ste) {
                int dimension = fieldGeometry.getDimension();
                if (ste.equals(ReservedVariable.X) || dimension > 1 && ste.equals(ReservedVariable.Y) || dimension > 2 && ste.equals(ReservedVariable.Z)) {
                    return true;
                }
                return false;
            }

            public boolean acceptFunction(String funcName) {
                return true;
            }
        };
    }
    firePropertyChange("geometry", oldValue, fieldGeometry);
}

Example 2 with AutoCompleteSymbolFilter

use of cbit.vcell.parser.AutoCompleteSymbolFilter in project vcell by virtualcell.

the class ReactionRule method getAutoCompleteSymbolFilter.

public AutoCompleteSymbolFilter getAutoCompleteSymbolFilter() {
    AutoCompleteSymbolFilter stef = new AutoCompleteSymbolFilter() {

        public boolean accept(SymbolTableEntry ste) {
            if (ste instanceof StructureSize) {
                if (((StructureSize) ste).getStructure() != structure) {
                    return false;
                }
            } else {
                if (structure instanceof Membrane) {
                    Membrane membrane = (Membrane) structure;
                    StructureTopology structTopology = getModel().getStructureTopology();
                    if (ste instanceof SpeciesContext) {
                        Structure entryStructure = ((SpeciesContext) ste).getStructure();
                        if (entryStructure != membrane && entryStructure != structTopology.getInsideFeature(membrane) && entryStructure != structTopology.getOutsideFeature(membrane)) {
                            return false;
                        }
                    } else if (ste instanceof MembraneVoltage) {
                        if (((MembraneVoltage) ste).getMembrane() != membrane) {
                            return false;
                        }
                    }
                } else {
                    if (ste instanceof SpeciesContext) {
                        Structure entryStructure = ((SpeciesContext) ste).getStructure();
                        if (entryStructure != structure) {
                            return false;
                        }
                    } else if (ste instanceof MembraneVoltage) {
                        return false;
                    }
                }
            }
            return true;
        }

        public boolean acceptFunction(String funcName) {
            return true;
        }
    };
    return stef;
}

Example 3 with AutoCompleteSymbolFilter

use of cbit.vcell.parser.AutoCompleteSymbolFilter in project vcell by virtualcell.

the class ReactionStep method getAutoCompleteSymbolFilter.

public AutoCompleteSymbolFilter getAutoCompleteSymbolFilter() {
    AutoCompleteSymbolFilter stef = new AutoCompleteSymbolFilter() {

        public boolean accept(SymbolTableEntry ste) {
            if (ste instanceof StructureSize) {
                if (((StructureSize) ste).getStructure() != structure) {
                    return false;
                }
            } else {
                if (structure instanceof Membrane) {
                    Membrane membrane = (Membrane) structure;
                    StructureTopology structTopology = getModel().getStructureTopology();
                    if (ste instanceof SpeciesContext) {
                        Structure entryStructure = ((SpeciesContext) ste).getStructure();
                        if (entryStructure != membrane && entryStructure != structTopology.getInsideFeature(membrane) && entryStructure != structTopology.getOutsideFeature(membrane)) {
                            // return false;
                            return true;
                        }
                    } else if (ste instanceof MembraneVoltage) {
                        if (((MembraneVoltage) ste).getMembrane() != membrane) {
                            return false;
                        }
                    }
                } else {
                    // structure is a compartment
                    if (ste instanceof SpeciesContext) {
                        Structure entryStructure = ((SpeciesContext) ste).getStructure();
                        if (entryStructure != structure) {
                            // return false;
                            return true;
                        }
                    } else if (ste instanceof MembraneVoltage) {
                        return false;
                    }
                }
            }
            return true;
        }

        public boolean acceptFunction(String funcName) {
            return true;
        }
    };
    return stef;
}

Example 4 with AutoCompleteSymbolFilter

use of cbit.vcell.parser.AutoCompleteSymbolFilter in project vcell by virtualcell.

the class OutputFunctionContext method getAutoCompleteSymbolFilter.

public AutoCompleteSymbolFilter getAutoCompleteSymbolFilter() {
    AutoCompleteSymbolFilter stef = new AutoCompleteSymbolFilter() {

        public boolean accept(SymbolTableEntry ste) {
            MathDescription math = getSimulationOwner().getMathDescription();
            Variable var = math.getVariable(ste.getName());
            return (!(var instanceof InsideVariable || var instanceof OutsideVariable));
        }

        public boolean acceptFunction(String funcName) {
            return true;
        }
    };
    return stef;
}

Example 5 with AutoCompleteSymbolFilter

use of cbit.vcell.parser.AutoCompleteSymbolFilter in project vcell by virtualcell.

the class OutputFunctionContext method getAutoCompleteSymbolFilter.

public AutoCompleteSymbolFilter getAutoCompleteSymbolFilter(final Domain functionDomain) {
    AutoCompleteSymbolFilter stef = new AutoCompleteSymbolFilter() {

        public boolean accept(SymbolTableEntry ste) {
            if (simulationOwner.getGeometry().getDimension() > 0) {
                if (functionDomain == null) {
                    return true;
                }
                if (ste.getName().endsWith(InsideVariable.INSIDE_VARIABLE_SUFFIX) || ste.getName().endsWith(OutsideVariable.OUTSIDE_VARIABLE_SUFFIX)) {
                    return false;
                }
                if (ste instanceof ReservedVariable) {
                    return true;
                }
                if (ste instanceof AnnotatedFunction) {
                    return functionDomain.compareEqual(((AnnotatedFunction) ste).getDomain());
                }
                if (ste instanceof Variable) {
                    Variable var = (Variable) ste;
                    if (var.getDomain() == null) {
                        return true;
                    }
                    GeometryClass gc = simulationOwner.getGeometry().getGeometryClass(functionDomain.getName());
                    GeometryClass vargc = simulationOwner.getGeometry().getGeometryClass(var.getDomain().getName());
                    if (gc instanceof SurfaceClass && vargc instanceof SubVolume) {
                        if (((SurfaceClass) gc).isAdjacentTo((SubVolume) vargc)) {
                            return true;
                        } else {
                            return false;
                        }
                    } else {
                        return var.getDomain().compareEqual(functionDomain);
                    }
                }
            }
            return true;
        }

        public boolean acceptFunction(String funcName) {
            return true;
        }
    };
    return stef;
}