Examples with SimpleJobStatus cbit.vcell.server.SimpleJobStatus used on opensource projects

Example 11 with SimpleJobStatus

use of cbit.vcell.server.SimpleJobStatus in project vcell by virtualcell.

the class AdminJobsRestlet method handle.

@Override
public void handle(Request req, Response response) {
    if (req.getMethod().equals(Method.GET)) {
        try {
            VCellApiApplication application = ((VCellApiApplication) getApplication());
            // User vcellUser = application.getVCellUser(req.getChallengeResponse(),AuthenticationPolicy.prohibitInvalidCredentials);
            // User adminUser = new User(PropertyLoader.ADMINISTRATOR_ACCOUNT, new KeyValue(PropertyLoader.ADMINISTRATOR_ID));
            // if (!vcellUser.equals(adminUser)) {
            // getLogger().severe("AdminJobsRestlet: user '"+vcellUser.toString()+"' is not authorized");
            // response.setStatus(Status.CLIENT_ERROR_UNAUTHORIZED);
            // response.setEntity("not authorized for this service", MediaType.TEXT_PLAIN);
            // return;
            // }
            HttpRequest request = (HttpRequest) req;
            Form form = request.getResourceRef().getQueryAsForm();
            String jsonQuery = form.getFirstValue(PARAM_JSON_QUERY, true);
            Gson gson = new Gson();
            SimpleJobStatusQuerySpec querySpec = new SimpleJobStatusQuerySpec();
            if (jsonQuery != null) {
                querySpec = gson.fromJson(jsonQuery, SimpleJobStatusQuerySpec.class);
            } else {
                querySpec.submitLowMS = getLongParam(form, PARAM_SUBMIT_LOW, null);
                querySpec.submitHighMS = getLongParam(form, PARAM_SUBMIT_HIGH, null);
                querySpec.startLowMS = getLongParam(form, PARAM_START_LOW, null);
                querySpec.startHighMS = getLongParam(form, PARAM_START_HIGH, null);
                querySpec.endLowMS = getLongParam(form, PARAM_END_LOW, null);
                querySpec.endHighMS = getLongParam(form, PARAM_END_HIGH, null);
                querySpec.startRow = getIntegerParam(form, PARAM_START_ROW, 0);
                querySpec.maxRows = getIntegerParam(form, PARAM_MAX_ROWS, 100);
                querySpec.serverId = getStringParam(form, PARAM_SERVERID, null);
                querySpec.computeHost = getStringParam(form, PARAM_COMPUTEHOST, null);
                querySpec.userid = getStringParam(form, PARAM_USERID, null);
                querySpec.simId = getLongParam(form, PARAM_SIMID, null);
                querySpec.jobId = getLongParam(form, PARAM_JOBID, null);
                querySpec.taskId = getLongParam(form, PARAM_TASKID, null);
                querySpec.hasData = getBooleanParam(form, PARAM_HAS_DATA, null);
                querySpec.waiting = getBooleanParam(form, PARAM_STATUS_WAITING, true);
                querySpec.queued = getBooleanParam(form, PARAM_STATUS_QUEUED, true);
                querySpec.dispatched = getBooleanParam(form, PARAM_STATUS_DISPATCHED, true);
                querySpec.running = getBooleanParam(form, PARAM_STATUS_RUNNING, true);
                querySpec.completed = getBooleanParam(form, PARAM_STATUS_COMPLETED, true);
                querySpec.failed = getBooleanParam(form, PARAM_STATUS_FAILED, true);
                querySpec.stopped = getBooleanParam(form, PARAM_STATUS_STOPPED, true);
            }
            if (querySpec.serverId != null) {
                querySpec.serverId = querySpec.serverId.toLowerCase();
            }
            AdminService adminService = application.getAdminService();
            SimpleJobStatus[] jobStatusArray = adminService.query(querySpec);
            SimpleJobStatusRepresentation[] reps = new SimpleJobStatusRepresentation[jobStatusArray.length];
            for (int i = 0; i < jobStatusArray.length; i++) {
                reps[i] = jobStatusArray[i].toRep();
            }
            String jobStatusArrayJson = gson.toJson(reps);
            response.setStatus(Status.SUCCESS_OK);
            response.setEntity(new JsonRepresentation(jobStatusArrayJson));
        } catch (Exception e) {
            getLogger().severe("failed to retrieve job status: " + e.getMessage());
            e.printStackTrace();
            response.setStatus(Status.SERVER_ERROR_INTERNAL);
            response.setEntity("failed to retrieve job status: " + e.getMessage(), MediaType.TEXT_PLAIN);
        }
    }
}

Example 12 with SimpleJobStatus

use of cbit.vcell.server.SimpleJobStatus in project vcell by virtualcell.

the class AdminService method query.

public SimpleJobStatus[] query(SimpleJobStatusQuerySpec querySpec) throws ObjectNotFoundException, DataAccessException {
    SimulationDatabase simDatabase = new SimulationDatabaseDirect(adminDbTop, dbServerImpl, false);
    SimpleJobStatus[] resultList = simDatabase.getSimpleJobStatus(null, querySpec);
    return resultList;
}

Example 13 with SimpleJobStatus

use of cbit.vcell.server.SimpleJobStatus in project vcell by virtualcell.

the class SimulationDatabaseDirect method getSimpleJobStatus.

@Override
public SimpleJobStatus[] getSimpleJobStatus(User user, SimpleJobStatusQuerySpec simStatusQuerySpec) throws ObjectNotFoundException, DataAccessException {
    // 
    // create corresponding SimpleJobStatus[] from SimpleJobStatusPersistent[]
    // 1) get SimpleJobStatusPersistent from database (with stored status, metadata, and documentLinks - but no stateInfo)
    // 2) if already in cache, use SimulationJobStatus and stateInfo from cache.
    // 3) if not in cache, use SimulationJobStatus from database and no stateInfo, populate cache.
    // 
    List<SimpleJobStatusPersistent> simpleJobStatusPersistentList = databaseServerImpl.getSimpleJobStatus(simStatusQuerySpec);
    ArrayList<SimpleJobStatus> simpleJobStatusList = new ArrayList<SimpleJobStatus>();
    for (SimpleJobStatusPersistent simpleJobStatusPersistent : simpleJobStatusPersistentList) {
        SimulationJobStatusPersistent simJobStatusDb = simpleJobStatusPersistent.jobStatus;
        SimJobStatusKey key = new SimJobStatusKey(simpleJobStatusPersistent.simulationMetadata.vcSimID.getSimulationKey(), simJobStatusDb.getJobIndex(), simJobStatusDb.getTaskID());
        SimStatusCacheEntry simStatusCacheEntry = cache.get(key);
        // TODO need to get this from memory cache.
        StateInfo cachedStateInfo = null;
        SimulationJobStatus latestSimulationJobStatus = null;
        if (simStatusCacheEntry != null) {
            cachedStateInfo = simStatusCacheEntry.stateInfo;
            latestSimulationJobStatus = simStatusCacheEntry.jobStatus;
        } else {
            latestSimulationJobStatus = translateToSimulationJobStatusTransient(simJobStatusDb);
            cache.put(key, new SimStatusCacheEntry(latestSimulationJobStatus, null));
        }
        SimpleJobStatus bestSimpleJobStatus = translateToSimpleJobStatusTransient(simpleJobStatusPersistent, latestSimulationJobStatus, cachedStateInfo);
        // uses latest SimulationJobStatus and StateInfo.
        simpleJobStatusList.add(bestSimpleJobStatus);
    }
    return simpleJobStatusList.toArray(new SimpleJobStatus[simpleJobStatusList.size()]);
}