Examples with SimulationJobStatus cbit.vcell.server.SimulationJobStatus used on opensource projects

Example 21 with SimulationJobStatus

use of cbit.vcell.server.SimulationJobStatus in project vcell by virtualcell.

the class AdminJobsRestlet method handle.

@Override
public void handle(Request req, Response response) {
    if (req.getMethod().equals(Method.GET)) {
        try {
            VCellApiApplication application = ((VCellApiApplication) getApplication());
            // User vcellUser = application.getVCellUser(req.getChallengeResponse(),AuthenticationPolicy.prohibitInvalidCredentials);
            // User adminUser = new User(PropertyLoader.ADMINISTRATOR_ACCOUNT, new KeyValue(PropertyLoader.ADMINISTRATOR_ID));
            // if (!vcellUser.equals(adminUser)) {
            // getLogger().severe("AdminJobsRestlet: user '"+vcellUser.toString()+"' is not authorized");
            // response.setStatus(Status.CLIENT_ERROR_UNAUTHORIZED);
            // response.setEntity("not authorized for this service", MediaType.TEXT_PLAIN);
            // return;
            // }
            HttpRequest request = (HttpRequest) req;
            Form form = request.getResourceRef().getQueryAsForm();
            String jsonQuery = form.getFirstValue(PARAM_JSON_QUERY, true);
            Gson gson = new Gson();
            SimpleJobStatusQuerySpec querySpec = new SimpleJobStatusQuerySpec();
            if (jsonQuery != null) {
                querySpec = gson.fromJson(jsonQuery, SimpleJobStatusQuerySpec.class);
            } else {
                querySpec.submitLowMS = getLongParam(form, PARAM_SUBMIT_LOW, null);
                querySpec.submitHighMS = getLongParam(form, PARAM_SUBMIT_HIGH, null);
                querySpec.startLowMS = getLongParam(form, PARAM_START_LOW, null);
                querySpec.startHighMS = getLongParam(form, PARAM_START_HIGH, null);
                querySpec.endLowMS = getLongParam(form, PARAM_END_LOW, null);
                querySpec.endHighMS = getLongParam(form, PARAM_END_HIGH, null);
                querySpec.startRow = getIntegerParam(form, PARAM_START_ROW, 0);
                querySpec.maxRows = getIntegerParam(form, PARAM_MAX_ROWS, 100);
                querySpec.serverId = getStringParam(form, PARAM_SERVERID, null);
                querySpec.computeHost = getStringParam(form, PARAM_COMPUTEHOST, null);
                querySpec.userid = getStringParam(form, PARAM_USERID, null);
                querySpec.simId = getLongParam(form, PARAM_SIMID, null);
                querySpec.jobId = getLongParam(form, PARAM_JOBID, null);
                querySpec.taskId = getLongParam(form, PARAM_TASKID, null);
                querySpec.hasData = getBooleanParam(form, PARAM_HAS_DATA, null);
                querySpec.waiting = getBooleanParam(form, PARAM_STATUS_WAITING, true);
                querySpec.queued = getBooleanParam(form, PARAM_STATUS_QUEUED, true);
                querySpec.dispatched = getBooleanParam(form, PARAM_STATUS_DISPATCHED, true);
                querySpec.running = getBooleanParam(form, PARAM_STATUS_RUNNING, true);
                querySpec.completed = getBooleanParam(form, PARAM_STATUS_COMPLETED, true);
                querySpec.failed = getBooleanParam(form, PARAM_STATUS_FAILED, true);
                querySpec.stopped = getBooleanParam(form, PARAM_STATUS_STOPPED, true);
            }
            if (querySpec.serverId != null) {
                querySpec.serverId = querySpec.serverId.toLowerCase();
            }
            AdminService adminService = application.getAdminService();
            SimulationJobStatus[] jobStatusArray = adminService.query(querySpec);
            SimpleJobStatusRepresentation[] reps = new SimpleJobStatusRepresentation[jobStatusArray.length];
            for (int i = 0; i < jobStatusArray.length; i++) {
                reps[i] = jobStatusArray[i].toRep();
            }
            String jobStatusArrayJson = gson.toJson(reps);
            response.setStatus(Status.SUCCESS_OK);
            response.setEntity(new JsonRepresentation(jobStatusArrayJson));
        } catch (Exception e) {
            getLogger().severe("failed to retrieve job status: " + e.getMessage());
            e.printStackTrace();
            response.setStatus(Status.SERVER_ERROR_INTERNAL);
            response.setEntity("failed to retrieve job status: " + e.getMessage(), MediaType.TEXT_PLAIN);
        }
    }
}

Example 22 with SimulationJobStatus

use of cbit.vcell.server.SimulationJobStatus in project vcell by virtualcell.

the class SimulationStatusDetails method getSimulationStatusDisplay.

/**
 * Comment
 */
Object getSimulationStatusDisplay(int index) {
    SimulationStatus simStatus = simWorkspace.getSimulationStatus(sim);
    if (simStatus != null) {
        SimulationJobStatus jobStatus = simStatus.getJobStatus(index);
        Double progress = simStatus.getProgressAt(index);
        if (jobStatus != null) {
            if (progress != null && jobStatus.getSchedulerStatus().isRunning() && progress.doubleValue() > 0) {
                statusBars[index].setValue((int) (progress.doubleValue() * 100));
                return statusBars[index];
            } else {
                return jobStatus.getSimulationMessage().getDisplayMessage();
            }
        } else {
            return simStatus.getDetails();
        }
    }
    return null;
}

Example 23 with SimulationJobStatus

use of cbit.vcell.server.SimulationJobStatus in project vcell by virtualcell.

the class SimulationJobStatusEvent method fromJsonRep.

public static SimulationJobStatusEvent fromJsonRep(Object eventSource, SimulationJobStatusEventRepresentation eventRep) {
    String simid = Simulation.createSimulationID(new KeyValue(eventRep.jobStatus.simulationKey));
    int jobIndex = eventRep.jobStatus.jobIndex;
    int taskID = eventRep.jobStatus.taskID;
    VCellServerID serverID = VCellServerID.getServerID(eventRep.jobStatus.vcellServerID);
    KeyValue simkey = new KeyValue(eventRep.jobStatus.simulationKey);
    User owner = new User(eventRep.jobStatus.owner_userid, new KeyValue(eventRep.jobStatus.onwer_userkey));
    VCSimulationIdentifier vcSimID = new VCSimulationIdentifier(simkey, owner);
    Date submitDate = eventRep.jobStatus.submitDate;
    SchedulerStatus schedulerStatus = null;
    if (eventRep.jobStatus.schedulerStatus != null) {
        schedulerStatus = SchedulerStatus.valueOf(eventRep.jobStatus.schedulerStatus.name());
    }
    HtcJobID htcJobID = null;
    Long htcJobNumber = eventRep.jobStatus.htcJobNumber;
    SimulationJobStatusRepresentation.BatchSystemType htcBatchSystemType = eventRep.jobStatus.htcBatchSystemType;
    if (htcJobNumber != null) {
        htcJobID = new HtcJobID(htcJobNumber.toString(), BatchSystemType.valueOf(htcBatchSystemType.name()));
    }
    SimulationMessage simMessage = null;
    DetailedState detailedState = DetailedState.valueOf(eventRep.jobStatus.detailedState.name());
    String message = eventRep.jobStatus.detailedStateMessage;
    if (detailedState != null) {
        simMessage = SimulationMessage.create(detailedState, message, htcJobID);
    }
    SimulationQueueEntryStatus simQueueStatus = null;
    Date queueDate = eventRep.jobStatus.queueDate;
    Integer queuePriority = eventRep.jobStatus.queuePriority;
    SimulationJobStatusRepresentation.SimulationQueueID queueId2 = eventRep.jobStatus.queueId;
    if (queueDate != null && queuePriority != null) {
        simQueueStatus = new SimulationQueueEntryStatus(queueDate, queuePriority, SimulationQueueID.valueOf(queueId2.name()));
    }
    SimulationExecutionStatus simExeStatus = null;
    Date startDate = eventRep.jobStatus.simexe_startDate;
    String computeHost = eventRep.jobStatus.computeHost;
    Date latestUpdateDate = eventRep.jobStatus.simexe_latestUpdateDate;
    Date endDate = eventRep.jobStatus.simexe_endDate;
    Boolean hasData = eventRep.jobStatus.hasData;
    if (latestUpdateDate != null) {
        simExeStatus = new SimulationExecutionStatus(startDate, computeHost, latestUpdateDate, endDate, hasData, htcJobID);
    }
    SimulationJobStatus jobStatus = new SimulationJobStatus(serverID, vcSimID, jobIndex, submitDate, schedulerStatus, taskID, simMessage, simQueueStatus, simExeStatus);
    Double progress = eventRep.progress;
    Double timepoint = eventRep.timePoint;
    String username = eventRep.username;
    SimulationJobStatusEvent event = new SimulationJobStatusEvent(eventSource, simid, jobStatus, progress, timepoint, username);
    return event;
}

Example 24 with SimulationJobStatus

use of cbit.vcell.server.SimulationJobStatus in project vcell by virtualcell.

the class SimulationControllerImpl method onServiceControlTopic_StopSimulation.

private void onServiceControlTopic_StopSimulation(VCMessage message) {
    KeyValue simKey = new KeyValue(String.valueOf(message.getLongProperty(MessageConstants.SIMKEY_PROPERTY)));
    int jobIndex = message.getIntProperty(MessageConstants.JOBINDEX_PROPERTY);
    int taskID = message.getIntProperty(MessageConstants.TASKID_PROPERTY);
    try {
        SimulationTaskID simTaskInfo = new SimulationTaskID(simKey, jobIndex, taskID);
        LocalSolverController solverController = solverControllerHash.get(simTaskInfo);
        if (solverController != null) {
            // can only start after updating the database is done
            solverController.stopSimulationJob();
        }
    } catch (Exception e) {
        lg.error(e.getMessage(), e);
        VCSimulationIdentifier vcSimID = new VCSimulationIdentifier(simKey, localVCellConnection.getUserLoginInfo().getUser());
        SimulationJobStatus newJobStatus = new SimulationJobStatus(VCellServerID.getSystemServerID(), vcSimID, jobIndex, null, SchedulerStatus.FAILED, taskID, SimulationMessage.jobFailed(e.getMessage()), null, null);
        SimulationJobStatusEvent event = new SimulationJobStatusEvent(this, Simulation.createSimulationID(simKey), newJobStatus, null, null, vcSimID.getOwner().getName());
        fireSimulationJobStatusEvent(event);
    }
}

Example 25 with SimulationJobStatus

use of cbit.vcell.server.SimulationJobStatus in project vcell by virtualcell.

the class SimulationControllerImpl method onWorkerEvent.

/**
 * Insert the method's description here.
 * Creation date: (3/11/2004 10:44:18 AM)
 * @param newJobStatus cbit.vcell.messaging.db.SimulationJobStatus
 * @param progress java.lang.Double
 * @param timePoint java.lang.Double
 */
public void onWorkerEvent(WorkerEvent workerEvent) {
    try {
        LocalVCMessageListener localVCMessageListener = new LocalVCMessageListener() {

            public void onLocalVCMessage(VCDestination destination, VCMessage objectMessage) {
                if (destination == VCellTopic.ClientStatusTopic && objectMessage.getObjectContent() instanceof SimulationJobStatus) {
                    onClientStatusTopic_SimulationJobStatus(objectMessage);
                } else {
                    throw new RuntimeException("SimulationControllerImpl.onWorkerEvent().localMessageListener::  expecting object message with SimulationJobStatus to topic " + VCellTopic.ClientStatusTopic.getName() + ": received \"" + objectMessage.show() + "\"");
                }
            }
        };
        LocalVCMessageAdapter vcMessageSession = new LocalVCMessageAdapter(localVCMessageListener);
        simulationDispatcherEngine.onWorkerEvent(workerEvent, simulationDatabase, vcMessageSession);
        vcMessageSession.deliverAll();
    } catch (Exception e) {
        lg.error(e.getMessage(), e);
    }
}