use of cbit.vcell.solver.server.SimulationMessagePersistent in project vcell by virtualcell.
the class SimulationJobTable method getSimulationJobStatus.
/**
* This method was created in VisualAge.
* @return VCImage
* @param rset ResultSet
* @param log SessionLog
*/
public SimulationJobStatusPersistent getSimulationJobStatus(ResultSet rset) throws SQLException {
// serverid
String serID = rset.getString(this.serverID.toString());
if (rset.wasNull()) {
serID = null;
}
// simRef
KeyValue parsedSimKey = new KeyValue(rset.getBigDecimal(simRef.toString()));
// userKey
KeyValue userKey = new KeyValue(rset.getBigDecimal(SimulationTable.table.ownerRef.toString()));
// userKey
String userid = rset.getString(UserTable.table.userid.toString());
org.vcell.util.document.User owner = new org.vcell.util.document.User(userid, userKey);
// submitDate
java.util.Date parsedSubmitDate = rset.getTimestamp(submitDate.toString());
// taskID
int parsedTaskID = rset.getInt(taskID.toString());
// schedulerStatus
int parsedSchedulerStatusInt = rset.getInt(schedulerStatus.toString());
SchedulerStatus parsedSchedulerStatus = SchedulerStatus.fromDatabaseNumber(parsedSchedulerStatusInt);
// statusMsg
String parsedStatusMsg = TokenMangler.getSQLRestoredString(rset.getString(statusMsg.toString()));
SimulationMessagePersistent simulationMessage = SimulationMessagePersistent.fromSerialized(parsedSchedulerStatus, parsedStatusMsg);
//
// read queue stuff
//
// queueDate
java.util.Date parsedQueuedDate = rset.getTimestamp(queueDate.toString());
// queuePriority
int parsedQueuePriority = rset.getInt(queuePriority.toString());
if (rset.wasNull()) {
parsedQueuePriority = -1;
}
// queueID
int parsedQueueID = rset.getInt(queueID.toString());
if (rset.wasNull()) {
parsedQueueID = -1;
}
SimulationJobStatusPersistent.SimulationQueueID simulationQueueID = SimulationJobStatusPersistent.SimulationQueueID.fromDatabaseNumber(parsedQueueID);
SimulationQueueEntryStatusPersistent simQueueEntryStatus = new SimulationQueueEntryStatusPersistent(parsedQueuedDate, parsedQueuePriority, simulationQueueID);
//
// read solver stuff
//
// startDate
java.util.Date parsedStartDate = rset.getTimestamp(startDate.toString());
// computeHost
String parsedComputeHost = rset.getString(computeHost.toString());
// latestUpdateDate
java.util.Date parsedLatestUpdateDate = rset.getTimestamp(latestUpdateDate.toString());
// endDate
java.util.Date parsedEndDate = rset.getTimestamp(endDate.toString());
// hasData
String parsedHasData = rset.getString(hasData.toString());
HtcJobID parsedHtcJobID = null;
String htcJobIDString = rset.getString(pbsJobID.toString());
if (!rset.wasNull() && htcJobIDString != null && htcJobIDString.length() > 0) {
parsedHtcJobID = SimulationJobTable.fromDatabase(htcJobIDString);
}
SimulationExecutionStatusPersistent simExeStatus = new SimulationExecutionStatusPersistent(parsedStartDate, parsedComputeHost, parsedLatestUpdateDate, parsedEndDate, parsedHasData != null, parsedHtcJobID);
VCSimulationIdentifier parsedVCSimID = new VCSimulationIdentifier(parsedSimKey, owner);
// jobIndex
int parsedJobIndex = rset.getInt(jobIndex.toString());
SimulationJobStatusPersistent simulationJobStatus = new SimulationJobStatusPersistent(VCellServerID.getServerID(serID), parsedVCSimID, parsedJobIndex, parsedSubmitDate, parsedSchedulerStatus, parsedTaskID, simulationMessage, simQueueEntryStatus, simExeStatus);
// sysDate
java.util.Date parsedSysDate = rset.getTimestamp(DatabaseConstants.SYSDATE_COLUMN_NAME);
if (!rset.wasNull()) {
simulationJobStatus.setTimeDateStamp(parsedSysDate);
}
return simulationJobStatus;
}
use of cbit.vcell.solver.server.SimulationMessagePersistent in project vcell by virtualcell.
the class SimulationDatabaseDirect method translateToSimulationJobStatusPersistent.
private SimulationJobStatusPersistent translateToSimulationJobStatusPersistent(SimulationJobStatus simJobStatus) {
VCellServerID serverID = simJobStatus.getServerID();
VCSimulationIdentifier vcSimID = simJobStatus.getVCSimulationIdentifier();
int jobIndex = simJobStatus.getJobIndex();
Date submitDate = simJobStatus.getSubmitDate();
SimulationJobStatusPersistent.SchedulerStatus schedulerStatus = SimulationJobStatusPersistent.SchedulerStatus.valueOf(simJobStatus.getSchedulerStatus().name());
int taskID = simJobStatus.getTaskID();
SimulationMessagePersistent simMessage = SimulationMessagePersistent.fromSerializedMessage(simJobStatus.getSimulationMessage().toSerialization());
Date queueDate = simJobStatus.getSimulationQueueEntryStatus().getQueueDate();
int queuePriority = simJobStatus.getSimulationQueueEntryStatus().getQueuePriority();
SimulationJobStatusPersistent.SimulationQueueID queueId = SimulationJobStatusPersistent.SimulationQueueID.valueOf(simJobStatus.getSimulationQueueEntryStatus().getQueueID().name());
SimulationQueueEntryStatusPersistent simQueueStatus = new SimulationQueueEntryStatusPersistent(queueDate, queuePriority, queueId);
SimulationExecutionStatusPersistent simExecStatus = new SimulationExecutionStatusPersistent(simJobStatus.getSimulationExecutionStatus().getStartDate(), simJobStatus.getSimulationExecutionStatus().getComputeHost(), simJobStatus.getSimulationExecutionStatus().getLatestUpdateDate(), simJobStatus.getSimulationExecutionStatus().getEndDate(), simJobStatus.getSimulationExecutionStatus().hasData(), simJobStatus.getSimulationExecutionStatus().getHtcJobID());
SimulationJobStatusPersistent simJobStatusPersistent = new SimulationJobStatusPersistent(serverID, vcSimID, jobIndex, submitDate, schedulerStatus, taskID, simMessage, simQueueStatus, simExecStatus);
return simJobStatusPersistent;
}
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