Examples with VarStatistics cbit.vcell.util.FunctionRangeGenerator.VarStatistics used on opensource projects

Example 1 with VarStatistics

use of cbit.vcell.util.FunctionRangeGenerator.VarStatistics in project vcell by virtualcell.

the class PDEDataViewer method calcAutoAllTimes.

private void calcAutoAllTimes() throws Exception {
    HashSet<String> stateVarNames = null;
    Variable theVariable = null;
    boolean bStateVar = true;
    boolean isFieldData = getPdeDataContext().getVCDataIdentifier() instanceof ExternalDataIdentifier || getPdeDataContext().getVCDataIdentifier() instanceof MergedDataInfo;
    if (isFieldData) {
        // fielddata
        DataIdentifier[] dataids = getPdeDataContext().getDataIdentifiers();
        stateVarNames = new HashSet<>();
        for (int i = 0; i < dataids.length; i++) {
            if (!dataids[i].isFunction()) {
                stateVarNames.add(dataids[i].getName());
            }
        // System.out.println("name:'"+dataids[i].getName()+"' type:"+dataids[i].getVariableType()+" func:"+dataids[i].isFunction());
        }
        bStateVar = !getPdeDataContext().getDataIdentifier().isFunction();
        if (bStateVar) {
            theVariable = new VolVariable(getPdeDataContext().getDataIdentifier().getName(), getPdeDataContext().getDataIdentifier().getDomain());
        } else {
            AnnotatedFunction[] funcs = getPdeDataContext().getFunctions();
            for (int i = 0; i < funcs.length; i++) {
                if (funcs[i].getName().equals(getPdeDataContext().getDataIdentifier().getName())) {
                    theVariable = funcs[i];
                    break;
                }
            }
        }
    } else {
        stateVarNames = getSimulation().getMathDescription().getStateVariableNames();
        theVariable = getSimulation().getMathDescription().getVariable(getPdeDataContext().getVariableName());
        if (theVariable == null) {
            theVariable = ((ClientPDEDataContext) getPdeDataContext()).getDataManager().getOutputContext().getOutputFunction(getPdeDataContext().getVariableName());
        }
        if (theVariable == null) {
            DataProcessingOutputInfo dataProcessingOutputInfo = DataProcessingResultsPanel.getDataProcessingOutputInfo(getPdeDataContext());
            if (dataProcessingOutputInfo != null && Arrays.asList(dataProcessingOutputInfo.getVariableNames()).contains(getPdeDataContext().getVariableName())) {
                // PostProcess Variable
                return;
            }
        }
        bStateVar = stateVarNames.contains(getPdeDataContext().getVariableName());
    }
    if (theVariable == null) {
        throw new Exception("Unexpected Alltimes... selected variable '" + getPdeDataContext().getVariableName() + "' is not stateVariable or OutputFunction");
    }
    if (getPDEDataContextPanel1().getdisplayAdapterService1().getAllTimes()) {
        // min-max over all timepoints (allTimes)
        if (theVariable.isConstant()) {
            getPDEDataContextPanel1().getdisplayAdapterServicePanel1().changeAllTimesButtonText(DisplayAdapterServicePanel.ALL_TIMES__STATE_TEXT);
            double constVal = theVariable.getExpression().evaluateConstant();
            getPDEDataContextPanel1().setFunctionStatisticsRange(new Range(constVal, constVal));
        } else if (bStateVar) {
            getPDEDataContextPanel1().getdisplayAdapterServicePanel1().changeAllTimesButtonText(DisplayAdapterServicePanel.ALL_TIMES__STATE_TEXT);
            ArrayList<VarStatistics> varStatsArr = calcVarStat(getPdeDataContext(), new String[] { theVariable.getName() });
            if (errorAutoAllTimes(varStatsArr != null, (varStatsArr == null ? null : varStatsArr.size() > 0), isFieldData)) {
                // no postprocessinfo
                return;
            }
            FunctionStatistics functionStatistics = new FunctionStatistics(varStatsArr.get(0).minValuesOverTime, varStatsArr.get(0).maxValuesOverTime);
            getPDEDataContextPanel1().setFunctionStatisticsRange(new Range(functionStatistics.getMinOverTime(), functionStatistics.getMaxOverTime()));
        } else if (theVariable instanceof Function) {
            getPDEDataContextPanel1().getdisplayAdapterServicePanel1().changeAllTimesButtonText(DisplayAdapterServicePanel.ALL_TIMES__APPROX_TEXT);
            Function flattened = MathDescription.getFlattenedFunctions(SimulationSymbolTable.createMathSymbolTableFactory(), getSimulation().getMathDescription(), new String[] { theVariable.getName() })[0];
            if (flattened == null) {
                flattened = (Function) theVariable;
            }
            ArrayList<VarStatistics> varStatsArr = calcVarStat(getPdeDataContext(), stateVarNames.toArray(new String[0]));
            if (errorAutoAllTimes(varStatsArr != null, (varStatsArr == null ? null : varStatsArr.size() > 0), isFieldData)) {
                // check for no postprocessinfo
                return;
            }
            if (varStatsArr.size() == stateVarNames.size()) {
                if (getSimulation().getMeshSpecification().getGeometry().getGeometrySurfaceDescription().getRegionImage() == null) {
                    getSimulation().getMeshSpecification().getGeometry().getGeometrySurfaceDescription().updateAll();
                }
                FunctionStatistics functionStatistics = FunctionRangeGenerator.getFunctionStatistics(flattened.getExpression(), varStatsArr.toArray(new VarStatistics[0]), getPdeDataContext().getTimePoints(), getPdeDataContext().getCartesianMesh(), calcInDomainBitSet(), getPdeDataContext().getDataIdentifier().getVariableType());
                getPDEDataContextPanel1().setFunctionStatisticsRange(new Range(functionStatistics.getMinOverTime(), functionStatistics.getMaxOverTime()));
            } else {
                throw new Exception("Unexpectede AllTimes... calculated state var stats size != mathdescr state var size");
            }
        } else {
            throw new Exception("Unexpected AllTimes... not constant, stateVar or function");
        }
    } else {
        // min-max at each timepoint (currTime)
        if (!(theVariable instanceof Function)) {
            getPDEDataContextPanel1().getdisplayAdapterServicePanel1().changeAllTimesButtonText(DisplayAdapterServicePanel.ALL_TIMES__STATE_TEXT);
        } else {
            getPDEDataContextPanel1().getdisplayAdapterServicePanel1().changeAllTimesButtonText(DisplayAdapterServicePanel.ALL_TIMES__APPROX_TEXT);
        }
        getPDEDataContextPanel1().setFunctionStatisticsRange(null);
    }
}

Example 2 with VarStatistics

use of cbit.vcell.util.FunctionRangeGenerator.VarStatistics in project vcell by virtualcell.

the class PDEDataViewer method calcVarStat.

private static ArrayList<VarStatistics> calcVarStat(PDEDataContext pdeDataContext, String[] stateVarNames) throws Exception {
    ArrayList<VarStatistics> varStatsArr = new ArrayList<>();
    DataProcessingOutputInfo dataProcessingOutputInfo = DataProcessingResultsPanel.getDataProcessingOutputInfo(pdeDataContext);
    if (dataProcessingOutputInfo == null) {
        return null;
    }
    String[] statisticVarNames = dataProcessingOutputInfo.getVariableNames();
    for (String stateVarName : stateVarNames) {
        double[] minValuesOvertime = null;
        double[] maxValuesOverTime = null;
        for (String statisticVarName : statisticVarNames) {
            if (statisticVarName.startsWith(stateVarName + "_min")) {
                minValuesOvertime = dataProcessingOutputInfo.getVariableStatValues().get(statisticVarName);
            }
            if (statisticVarName.startsWith(stateVarName + "_max")) {
                maxValuesOverTime = dataProcessingOutputInfo.getVariableStatValues().get(statisticVarName);
            }
        }
        if (minValuesOvertime != null && maxValuesOverTime != null) {
            FunctionRangeGenerator.VarStatistics varstatistics = new VarStatistics(stateVarName, minValuesOvertime, maxValuesOverTime);
            varStatsArr.add(varstatistics);
        }
    }
    return varStatsArr;
}