Examples with SnowowlRuntimeException com.b2international.snowowl.core.api.SnowowlRuntimeException used on opensource projects

Example 26 with SnowowlRuntimeException

use of com.b2international.snowowl.core.api.SnowowlRuntimeException in project snow-owl by b2ihealthcare.

the class EclExpression method resolve.

public Promise<Set<String>> resolve(final BranchContext context) {
    if (promise == null) {
        RevisionSearcher searcher = context.service(RevisionSearcher.class);
        boolean cached = context.optionalService(PathWithVersion.class).isPresent();
        promise = resolveToExpression(context).then(expression -> {
            // shortcut to extract IDs from the query itself if possible
            if (SnomedEclEvaluationRequest.canExtractIds(expression)) {
                return SnomedEclEvaluationRequest.extractIds(expression);
            }
            try {
                return newHashSet(searcher.search(Query.select(String.class).from(SnomedConceptDocument.class).fields(SnomedConceptDocument.Fields.ID).where(expression).limit(Integer.MAX_VALUE).cached(cached).build()));
            } catch (IOException e) {
                throw new SnowowlRuntimeException(e);
            }
        });
    }
    return promise;
}

Example 27 with SnowowlRuntimeException

use of com.b2international.snowowl.core.api.SnowowlRuntimeException in project snow-owl by b2ihealthcare.

the class SnomedRf2ExportRequest method createReleaseDirectory.

private Path createReleaseDirectory(final Path exportDirectory, final LocalDateTime archiveEffectiveTime) {
    final String releaseStatus = includePreReleaseContent ? "BETA" : "PRODUCTION";
    final String effectiveDate = DateTimeFormatter.ofPattern(DateFormats.ISO_8601_UTC).format(archiveEffectiveTime);
    final Path releaseDirectory = exportDirectory.resolve(String.format("SNOMEDCT_RF2_%s_%s", releaseStatus, effectiveDate));
    try {
        Files.createDirectories(releaseDirectory);
    } catch (final IOException e) {
        throw new SnowowlRuntimeException("Failed to create RF2 release directory for export.", e);
    }
    return releaseDirectory;
}

Example 28 with SnowowlRuntimeException

use of com.b2international.snowowl.core.api.SnowowlRuntimeException in project snow-owl by b2ihealthcare.

the class SnomedRf2ExportRequest method registerResult.

private void registerResult(final AttachmentRegistry fileRegistry, final UUID exportId, final Path exportDirectory) {
    File archiveFile = null;
    try {
        archiveFile = exportDirectory.resolveSibling(exportDirectory.getFileName() + ".zip").toFile();
        FileUtils.createZipArchive(exportDirectory.toFile(), archiveFile);
        // lgtm[java/input-resource-leak]
        fileRegistry.upload(exportId, new FileInputStream(archiveFile));
    } catch (final IOException e) {
        throw new SnowowlRuntimeException("Failed to register archive file from export directory.", e);
    } finally {
        if (archiveFile != null) {
            archiveFile.delete();
        }
    }
}

Example 29 with SnowowlRuntimeException

use of com.b2international.snowowl.core.api.SnowowlRuntimeException in project snow-owl by b2ihealthcare.

the class SnomedRf2ImportRequest method createDb.

private DB createDb() {
    try {
        Maker dbMaker = DBMaker.fileDB(Files.createTempDirectory(rf2Archive.toString()).resolve("rf2-import.db").toFile()).fileDeleteAfterClose().fileMmapEnable().fileMmapPreclearDisable();
        // for non-delta releases increase the allocation size
        if (releaseType != Rf2ReleaseType.DELTA) {
            dbMaker = dbMaker.allocateStartSize(// 256MB
            256 * 1024 * 1024).allocateIncrement(// 128MB
            128 * 1024 * 1024);
        }
        DB db = dbMaker.make();
        // preload file content into disk cache
        db.getStore().fileLoad();
        return db;
    } catch (IOException e) {
        throw new SnowowlRuntimeException("Couldn't create temporary db", e);
    }
}

Example 30 with SnowowlRuntimeException

use of com.b2international.snowowl.core.api.SnowowlRuntimeException in project snow-owl by b2ihealthcare.

the class Rf2Exporter method exportBranch.

public final void exportBranch(final Path releaseDirectory, final RepositoryContext context, final String branch, final long effectiveTimeStart, final long effectiveTimeEnd, final Set<String> visitedComponentEffectiveTimes) throws IOException {
    LOG.info("Exporting {} branch to '{}'", branch, getFileName());
    // Ensure that the path leading to the export file exists
    final Path exportFileDirectory = releaseDirectory.resolve(getRelativeDirectory());
    Files.createDirectories(exportFileDirectory);
    final Path exportFile = exportFileDirectory.resolve(getFileName());
    try (RandomAccessFile randomAccessFile = new RandomAccessFile(exportFile.toFile(), "rw")) {
        try (FileChannel fileChannel = randomAccessFile.getChannel()) {
            // Add a header if the file is empty
            if (randomAccessFile.length() == 0L) {
                fileChannel.write(toByteBuffer(TAB_JOINER.join(getHeader())));
                fileChannel.write(toByteBuffer(CR_LF));
            }
            // We want to append rows, if the file already exists, so jump to the end
            fileChannel.position(fileChannel.size());
            /*
				 * XXX: createSearchRequestBuilder() should handle namespace/language code
				 * filtering, if applicable; we will only handle the effective time and module
				 * filters here.
				 * 
				 * An effective time filter is always set, even if not in delta mode, to prevent
				 * exporting unpublished content twice.
				 */
            new BranchRequest<R>(branch, new RevisionIndexReadRequest<>(inner -> {
                createSearchRequestBuilder().filterByModules(// null value will be ignored
                modules).filterByEffectiveTime(effectiveTimeStart, effectiveTimeEnd).setLimit(BATCH_SIZE).setFields(Arrays.asList(getHeader())).stream(inner).flatMap(hits -> getMappedStream(hits, context, branch)).forEachOrdered(row -> {
                    String id = row.get(0);
                    String effectiveTime = row.get(1);
                    if (!visitedComponentEffectiveTimes.add(String.join("_", id, effectiveTime))) {
                        return;
                    }
                    try {
                        fileChannel.write(toByteBuffer(TAB_JOINER.join(row)));
                        fileChannel.write(toByteBuffer(CR_LF));
                    } catch (final IOException e) {
                        throw new SnowowlRuntimeException("Failed to write contents for file '" + exportFile.getFileName() + "'.");
                    }
                });
                return null;
            })).execute(context);
        }
    }
}