Examples with ImportDefectBuilder com.b2international.snowowl.core.request.io.ImportDefectAcceptor.ImportDefectBuilder used on opensource projects

Example 1 with ImportDefectBuilder

use of com.b2international.snowowl.core.request.io.ImportDefectAcceptor.ImportDefectBuilder in project snow-owl by b2ihealthcare.

the class SnomedRf2ImportRequest method readFile.

private void readFile(ZipEntry entry, final InputStream in, final ObjectReader oReader, Rf2EffectiveTimeSlices effectiveTimeSlices, Rf2ValidationIssueReporter reporter) throws IOException, JsonProcessingException {
    final String entryName = entry.getName();
    final ImportDefectAcceptor defectAcceptor = reporter.getDefectAcceptor(entryName);
    boolean header = true;
    Rf2ContentType<?> resolver = null;
    int lineNumber = 1;
    MappingIterator<String[]> mi = oReader.readValues(in);
    while (mi.hasNext()) {
        String[] line = mi.next();
        if (header) {
            for (Rf2ContentType<?> contentType : Rf2Format.getContentTypes()) {
                if (contentType.canResolve(line)) {
                    resolver = contentType;
                    break;
                }
            }
            if (resolver == null) {
                log.warn("Unrecognized RF2 file: {}", entryName);
                break;
            }
            header = false;
        } else {
            final String effectiveTimeKey = getEffectiveTimeKey(line[1]);
            final ImportDefectBuilder defectBuilder = defectAcceptor.on(Integer.toString(lineNumber));
            resolver.register(line, effectiveTimeSlices.getOrCreate(effectiveTimeKey), defectBuilder);
        }
        lineNumber++;
    }
}