Examples with Entry com.b2international.snowowl.fhir.core.model.Entry used on opensource projects

Example 1 with Entry

use of com.b2international.snowowl.fhir.core.model.Entry in project snow-owl by b2ihealthcare.

the class BundleTest method buildResponseBundle.

@Test
public void buildResponseBundle() throws Exception {
    LookupResult lookupResult = LookupResult.builder().name("test").display("display").addDesignation(Designation.builder().value("dValue").languageCode("uk").build()).addProperty(Property.builder().code("1234").description("propDescription").valueString("stringValue").addSubProperty(SubProperty.builder().code("subCode").description("subCodeDescription").valueInteger(1).build()).build()).build();
    Json json1 = new Parameters.Json(lookupResult);
    ParametersResponseEntry entry = ParametersResponseEntry.builder().resource(new Parameters.Fhir(json1.parameters())).response(BatchResponse.createOkResponse()).build();
    Bundle bundle = Bundle.builder().language("en").type(BundleType.BATCH_RESPONSE).addLink("self", "http://localhost:8080/snowowl/CodeSystem").addEntry(entry).build();
    assertEquals("en", bundle.getLanguage().getCodeValue());
    assertEquals(BundleType.BATCH_RESPONSE.getCode(), bundle.getType());
    Link link = bundle.getLink().iterator().next();
    assertEquals("self", link.getRelation());
    assertEquals("http://localhost:8080/snowowl/CodeSystem", link.getUrl().getUriValue());
    Entry bundleEntry = bundle.getItems().iterator().next();
    assertTrue(bundleEntry instanceof ParametersResponseEntry);
    ParametersResponseEntry responseEntry = (ParametersResponseEntry) bundleEntry;
    assertEquals("200", responseEntry.getResponse().getStatus());
    Fhir requestResource = responseEntry.getResponseResource();
    // Back to Domain JSON...
    Json json = new Parameters.Json(requestResource);
    LookupResult returnedResponse = objectMapper.convertValue(json, LookupResult.class);
    assertEquals("test", returnedResponse.getName());
    assertEquals("display", returnedResponse.getDisplay());
}

Example 2 with Entry

use of com.b2international.snowowl.fhir.core.model.Entry in project snow-owl by b2ihealthcare.

the class BundleTest method deserializeRequestBundle.

@Test
public void deserializeRequestBundle() throws Exception {
    String jsonCoding = "{ \"type\" : \"batch\", " + "\"resourceType\" : \"Bundle\", " + "\"entry\" : " + "[{\"request\" : " + "{\"method\" : \"POST\"," + "\"url\" : \"CodeSystem/$lookup\"}," + "\"resource\" : " + "{\"resourceType\" : \"Parameters\"," + "\"parameter\" : [" + "{\"valueUri\" : \"http://loinc.org\"," + "\"name\" : \"system\"}," + "{\"valueCode\" : \"23245-4\"," + "\"name\" : \"code\"}" + "]" + "}" + "}," + "{\"request\" : " + "{\"method\" : \"POST\"," + "\"url\" : \"CodeSystem/$lookup\"}," + "\"resource\" : " + "{\"resourceType\" : \"Parameters\"," + "\"parameter\" : [" + "{\"name\" : \"system\"," + "\"valueUri\" : \"http://snomed.info/sct\"}" + ",{\"valueCode\" : \"263495000\"," + "\"name\" : \"code\"}" + "]" + "}}" + "]}";
    Bundle bundle = objectMapper.readValue(jsonCoding, Bundle.class);
    assertEquals(BundleType.BATCH.getCode(), bundle.getType());
    Iterator<Entry> iterator = bundle.getItems().iterator();
    Entry bundleEntry = iterator.next();
    assertTrue(bundleEntry instanceof ParametersRequestEntry);
    ParametersRequestEntry requestEntry = (ParametersRequestEntry) bundleEntry;
    BatchRequest batchRequest = requestEntry.getRequest();
    assertEquals(HttpVerb.POST.getCode(), batchRequest.getMethod());
    assertEquals("CodeSystem/$lookup", batchRequest.getUrl().getUriValue());
    Fhir requestResource = requestEntry.getRequestResource();
    // Back to Domain JSON...
    Json json = new Parameters.Json(requestResource);
    LookupRequest returnedLookupRequest = objectMapper.convertValue(json, LookupRequest.class);
    assertEquals("23245-4", returnedLookupRequest.getCode());
    assertEquals("http://loinc.org", returnedLookupRequest.getSystem());
    bundleEntry = iterator.next();
    assertTrue(bundleEntry instanceof ParametersRequestEntry);
    requestEntry = (ParametersRequestEntry) bundleEntry;
    batchRequest = requestEntry.getRequest();
    assertEquals(HttpVerb.POST.getCode(), batchRequest.getMethod());
    assertEquals("CodeSystem/$lookup", batchRequest.getUrl().getUriValue());
    requestResource = requestEntry.getRequestResource();
    // Back to Domain JSON...
    json = new Parameters.Json(requestResource);
    returnedLookupRequest = objectMapper.convertValue(json, LookupRequest.class);
    assertEquals("263495000", returnedLookupRequest.getCode());
    assertEquals("http://snomed.info/sct", returnedLookupRequest.getSystem());
}

Example 3 with Entry

use of com.b2international.snowowl.fhir.core.model.Entry in project snow-owl by b2ihealthcare.

the class BundleTest method buildMixedBundle.

@Test
public void buildMixedBundle() throws Exception {
    LookupResult lookupResult = LookupResult.builder().name("test").display("display").addDesignation(Designation.builder().value("dValue").languageCode("uk").build()).addProperty(Property.builder().code("1234").description("propDescription").valueString("stringValue").build()).build();
    OperationOutcome operationOutcome = OperationOutcome.builder().addIssue(Issue.builder().code(IssueType.CODE_INVALID).diagnostics("Invalid code").severity(IssueSeverity.ERROR).build()).build();
    Json json1 = new Parameters.Json(lookupResult);
    ParametersResponseEntry lookupResultEntry = ParametersResponseEntry.builder().resource(new Parameters.Fhir(json1.parameters())).response(BatchResponse.createOkResponse()).build();
    OperationOutcomeEntry operationOutcomeEntry = OperationOutcomeEntry.builder().operationOutcome(operationOutcome).build();
    Bundle bundle = Bundle.builder().language("en").type(BundleType.BATCH_RESPONSE).addLink("self", "http://localhost:8080/snowowl/CodeSystem").addEntry(lookupResultEntry).addEntry(operationOutcomeEntry).build();
    assertEquals("en", bundle.getLanguage().getCodeValue());
    assertEquals(BundleType.BATCH_RESPONSE.getCode(), bundle.getType());
    Link link = bundle.getLink().iterator().next();
    assertEquals("self", link.getRelation());
    assertEquals("http://localhost:8080/snowowl/CodeSystem", link.getUrl().getUriValue());
    Iterator<Entry> iterator = bundle.getItems().iterator();
    Entry bundleEntry = iterator.next();
    assertTrue(bundleEntry instanceof ParametersResponseEntry);
    ParametersResponseEntry responseEntry = (ParametersResponseEntry) bundleEntry;
    assertEquals("200", responseEntry.getResponse().getStatus());
    Fhir requestResource = responseEntry.getResponseResource();
    // Back to Domain JSON...
    Json json = new Parameters.Json(requestResource);
    LookupResult returnedResponse = objectMapper.convertValue(json, LookupResult.class);
    assertEquals("test", returnedResponse.getName());
    assertEquals("display", returnedResponse.getDisplay());
    bundleEntry = iterator.next();
    assertTrue(bundleEntry instanceof OperationOutcomeEntry);
    OperationOutcomeEntry ooce = (OperationOutcomeEntry) bundleEntry;
    Collection<Issue> issues = ooce.getOperationOutcome().getIssues();
    assertEquals(1, issues.size());
    assertEquals(IssueSeverity.ERROR.getCode(), issues.iterator().next().getSeverity());
}

Example 4 with Entry

use of com.b2international.snowowl.fhir.core.model.Entry in project snow-owl by b2ihealthcare.

the class FhirBundleController method getBatchResponse.

@Operation(summary = "Perform batch operations", description = "Executes the FHIR requests included in the bundle provided.")
@ApiResponses({ @ApiResponse(responseCode = "200", description = "OK"), @ApiResponse(responseCode = "400", description = "Bad Request") })
@RequestMapping(value = "/", method = RequestMethod.POST, consumes = AbstractFhirController.APPLICATION_FHIR_JSON)
public Promise<Bundle> getBatchResponse(@Parameter(name = "bundle", description = "The bundle including the list of requests to perform") @RequestBody final Bundle bundle, HttpServletRequest request) throws JsonProcessingException {
    Collection<Entry> entries = bundle.getEntry();
    Bundle responseBundle = Bundle.builder().language("en").type(BundleType.BATCH_RESPONSE).build();
    ObjectNode rootNode = (ObjectNode) objectMapper.valueToTree(responseBundle);
    ArrayNode arrayNode = rootNode.putArray("entry");
    for (Entry entry : entries) {
        FhirBatchRequestProcessor requestProcessor = FhirBatchRequestProcessor.getInstance(entry, objectMapper, this);
        requestProcessor.process(arrayNode, request);
    }
    Bundle treeToValue = objectMapper.treeToValue(rootNode, Bundle.class);
    return Promise.immediate(treeToValue);
}

Example 5 with Entry

use of com.b2international.snowowl.fhir.core.model.Entry in project snow-owl by b2ihealthcare.

the class BundleTest method deserializeResponseBundle.

@Test
public void deserializeResponseBundle() throws Exception {
    String jsonResponse = "{\"resourceType\":\"Bundle\"," + "\"id\":\"ID\"," + "\"type\":\"batch-response\"," + "\"link\":[" + "{" + "\"relation\":\"self\"," + "\"url\":\"http://b2i.sg\"" + "}" + "]," + "\"entry\":[" + "{" + "\"resource\":{" + "\"resourceType\":\"Parameters\"," + "\"parameter\":[" + "{" + "\"name\":\"name\"," + "\"valueString\":\"LOINC\"" + "}," + "{" + "\"name\":\"version\"," + "\"valueString\":\"2.61\"" + "}," + "{" + "\"name\":\"display\"," + "\"valueString\":\"LOINC code label\"" + "}," + "{" + "\"name\":\"property\"," + "\"part\":[" + "{" + "\"name\":\"code\"," + "\"valueCode\":\"parent\"" + "}," + "{" + "\"name\":\"value\"," + "\"valueCode\":\"Parent code\"" + "}" + "]" + "}," + "{" + "\"name\":\"designation\"," + "\"part\":[" + "{" + "\"name\":\"language\"," + "\"valueCode\":\"en\"" + "}," + "{" + "\"name\":\"use\"," + "\"valueCoding\":{" + "\"system\":\"http://snomed.info/sct\"," + "\"code\":\"900000000000013009\"," + "\"display\":\"Synonym\"" + "}" + "}," + "{" + "\"name\":\"value\"," + "\"valueString\":\"SNOMED CT synonym\"" + "}" + "]" + "}" + "]" + "}," + "\"response\":{" + "\"status\":\"200\"" + "}" + "}" + "]" + "}";
    Bundle bundle = objectMapper.readValue(jsonResponse, Bundle.class);
    assertEquals(BundleType.BATCH_RESPONSE.getCode(), bundle.getType());
    Iterator<Entry> iterator = bundle.getItems().iterator();
    Entry bundleEntry = iterator.next();
    assertTrue(bundleEntry instanceof ParametersResponseEntry);
    ParametersResponseEntry responseEntry = (ParametersResponseEntry) bundleEntry;
    Fhir responseResource = responseEntry.getResponseResource();
    // Back to Domain JSON...
    Json json = new Parameters.Json(responseResource);
    LookupResult lookupResult = objectMapper.convertValue(json, LookupResult.class);
    assertEquals("LOINC", lookupResult.getName());
}