Examples with Match com.b2international.snowowl.fhir.core.model.conceptmap.Match used on opensource projects

Example 1 with Match

use of com.b2international.snowowl.fhir.core.model.conceptmap.Match in project snow-owl by b2ihealthcare.

the class TranslateSnomedConceptMapRestTest method assertMatchExists.

private void assertMatchExists(Collection<Match> matches, int refSetIndex, String equivalenceValue) {
    Optional<Match> optionalMatch = matches.stream().filter(m -> m.getSource().getUriValue().equals("http://snomed.info/sct/id/" + mapTypeRefSetIds.get(refSetIndex))).findFirst();
    assertTrue(optionalMatch.isPresent());
    Match match = optionalMatch.get();
    assertEquals(equivalenceValue, match.getEquivalence().getCodeValue());
    assertEquals("MO", match.getConcept().getCodeValue());
}

Example 2 with Match

use of com.b2international.snowowl.fhir.core.model.conceptmap.Match in project snow-owl by b2ihealthcare.

the class TranslateSnomedConceptMapRestTest method reverseTranslateMappingTest.

@Test
public void reverseTranslateMappingTest() throws Exception {
    String response = givenAuthenticatedRequest(FHIR_ROOT_CONTEXT).param("code", "MO").param("system", SnomedUri.SNOMED_BASE_URI_STRING).param("targetsystem", SnomedUri.SNOMED_BASE_URI_STRING).param("reverse", true).when().get("/ConceptMap/$translate").then().extract().asString();
    Fhir parameters = objectMapper.readValue(response, Parameters.Fhir.class);
    Json json = new Parameters.Json(parameters);
    TranslateResult result = objectMapper.convertValue(json, TranslateResult.class);
    assertTrue(result.getResult());
    assertEquals("4 match(es).", result.getMessage());
    Collection<Match> matches = result.getMatches();
    assertEquals(4, matches.size());
    assertMatchExists(matches, 0, "equivalent");
    assertMatchExists(matches, 1, "unmatched");
    assertMatchExists(matches, 2, "unmatched");
    assertMatchExists(matches, 3, "unmatched");
}

Example 3 with Match

use of com.b2international.snowowl.fhir.core.model.conceptmap.Match in project snow-owl by b2ihealthcare.

the class TranslateSnomedConceptMapRestTest method translateMappingTest.

@Test
public void translateMappingTest() throws Exception {
    String response = givenAuthenticatedRequest(FHIR_ROOT_CONTEXT).param("code", FhirTestConcepts.MICROORGANISM).param("system", SnomedUri.SNOMED_BASE_URI_STRING).param("targetsystem", SnomedUri.SNOMED_BASE_URI_STRING).when().get("/ConceptMap/$translate").asString();
    Fhir parameters = objectMapper.readValue(response, Parameters.Fhir.class);
    Json json = new Parameters.Json(parameters);
    TranslateResult result = objectMapper.convertValue(json, TranslateResult.class);
    assertTrue(result.getResult());
    assertEquals("4 match(es).", result.getMessage());
    Collection<Match> matches = result.getMatches();
    assertEquals(4, matches.size());
    assertMatchExists(matches, 0, "equivalent");
    assertMatchExists(matches, 1, "unmatched");
    assertMatchExists(matches, 2, "unmatched");
    assertMatchExists(matches, 3, "unmatched");
}

Example 4 with Match

use of com.b2international.snowowl.fhir.core.model.conceptmap.Match in project snow-owl by b2ihealthcare.

the class TranslateSnomedConceptMapRestTest method reverseTranslateSpecificMappingTest.

// From a specific Map type reference set
@Test
public void reverseTranslateSpecificMappingTest() throws Exception {
    String mapTypeRefsetUri = "SNOMEDCT/" + FHIR_MAP_TYPE_REFSET_VERSION + "/refset/" + mapTypeRefSetIds.get(0);
    String response = givenAuthenticatedRequest(FHIR_ROOT_CONTEXT).pathParam("id", mapTypeRefsetUri).param("code", "MO").param("system", SnomedUri.SNOMED_BASE_URI_STRING).param("targetsystem", SnomedUri.SNOMED_BASE_URI_STRING).param("reverse", true).when().get("/ConceptMap/{id}/$translate").asString();
    Fhir parameters = objectMapper.readValue(response, Parameters.Fhir.class);
    Json json = new Parameters.Json(parameters);
    TranslateResult result = objectMapper.convertValue(json, TranslateResult.class);
    assertTrue(result.getResult());
    assertTrue(result.getMessage().startsWith("Results for reference set"));
    Collection<Match> matches = result.getMatches();
    assertEquals(1, matches.size());
    Optional<Match> optionalMatch = matches.stream().filter(m -> m.getSource().getUriValue().equals("http://snomed.info/sct/id/" + mapTypeRefSetIds.get(0))).findFirst();
    assertTrue(optionalMatch.isPresent());
    Match match = optionalMatch.get();
    assertEquals("equivalent", match.getEquivalence().getCodeValue());
    assertEquals("MO", match.getConcept().getCodeValue());
}

Example 5 with Match

use of com.b2international.snowowl.fhir.core.model.conceptmap.Match in project snow-owl by b2ihealthcare.

the class TranslateSnomedConceptMapRestTest method translateSpecificMappingTest.

// From a specific Map type reference set
@Test
public void translateSpecificMappingTest() throws Exception {
    String mapTypeRefsetUri = "SNOMEDCT/" + FHIR_MAP_TYPE_REFSET_VERSION + "/refset/" + mapTypeRefSetIds.get(0);
    String response = givenAuthenticatedRequest(FHIR_ROOT_CONTEXT).pathParam("id", mapTypeRefsetUri).param("code", FhirTestConcepts.MICROORGANISM).param("system", SnomedUri.SNOMED_BASE_URI_STRING).param("targetsystem", SnomedUri.SNOMED_BASE_URI_STRING).when().get("/ConceptMap/{id}/$translate").asString();
    Fhir parameters = objectMapper.readValue(response, Parameters.Fhir.class);
    Json json = new Parameters.Json(parameters);
    TranslateResult result = objectMapper.convertValue(json, TranslateResult.class);
    assertTrue(result.getResult());
    assertTrue(result.getMessage().startsWith("Results for reference set"));
    Collection<Match> matches = result.getMatches();
    assertEquals(1, matches.size());
    Optional<Match> optionalMatch = matches.stream().filter(m -> m.getSource().getUriValue().equals("http://snomed.info/sct/id/" + mapTypeRefSetIds.get(0))).findFirst();
    assertTrue(optionalMatch.isPresent());
    Match match = optionalMatch.get();
    assertEquals("equivalent", match.getEquivalence().getCodeValue());
    assertEquals("MO", match.getConcept().getCodeValue());
}