Examples with InactivationProperties com.b2international.snowowl.snomed.core.domain.InactivationProperties used on opensource projects

Example 1 with InactivationProperties

use of com.b2international.snowowl.snomed.core.domain.InactivationProperties in project snow-owl by b2ihealthcare.

the class SnomedMergeApiTest method mergeThenRebaseOtherTask.

@Test
public void mergeThenRebaseOtherTask() throws Exception {
    final String conceptA = createNewConcept(branchPath);
    final IBranchPath a = BranchPathUtils.createPath(branchPath, "a");
    final IBranchPath b = BranchPathUtils.createPath(branchPath, "b");
    branching.createBranch(a).statusCode(201);
    branching.createBranch(b).statusCode(201);
    Map<?, ?> inactivationRequest = ImmutableMap.builder().put("active", false).put("inactivationProperties", new InactivationProperties(Concepts.DUPLICATE, List.of(new AssociationTarget(Concepts.REFSET_SAME_AS_ASSOCIATION, Concepts.FULLY_SPECIFIED_NAME)))).put("commitComment", "Inactivated concept").build();
    updateComponent(a, SnomedComponentType.CONCEPT, conceptA, inactivationRequest).statusCode(204);
    final String conceptB = createNewConcept(b);
    merge(a, branchPath, "Merge branch A").body("status", equalTo(Merge.Status.COMPLETED.name()));
    SnomedConcept conceptAOnParent = getComponent(branchPath, SnomedComponentType.CONCEPT, conceptA, "members(),relationships()").statusCode(200).extract().as(SnomedConcept.class);
    assertThat(conceptAOnParent.getRelationships()).hasSize(1);
    assertThat(conceptAOnParent.getMembers()).hasSize(2);
    merge(branchPath, b, "Rebase branch B").body("status", equalTo(Merge.Status.COMPLETED.name()));
    SnomedConcept conceptAOnBranchB = getComponent(b, SnomedComponentType.CONCEPT, conceptA, "members(),relationships()").statusCode(200).extract().as(SnomedConcept.class);
    assertThat(conceptAOnBranchB.getRelationships()).hasSize(1);
    assertThat(conceptAOnBranchB.getMembers()).hasSize(2);
    getComponent(b, SnomedComponentType.CONCEPT, conceptB, "relationships()").statusCode(200).extract().as(SnomedConcept.class);
}

Example 2 with InactivationProperties

use of com.b2international.snowowl.snomed.core.domain.InactivationProperties in project snow-owl by b2ihealthcare.

the class SnomedComponentInactivationApiTest method reuseConceptAndDescriptionInactivationIndicators.

@Test
public void reuseConceptAndDescriptionInactivationIndicators() throws Exception {
    // create a concept
    String conceptId = createNewConcept(branchPath);
    SnomedConcept concept = getConcept(conceptId, "descriptions()");
    // add pending move to concept and descriptions
    Map<?, ?> pendingMoveUpdate = ImmutableMap.of("inactivationProperties", new InactivationProperties(Concepts.PENDING_MOVE, null), "commitComment", "Set to Pending Move");
    updateComponent(branchPath, SnomedComponentType.CONCEPT, conceptId, pendingMoveUpdate).statusCode(204);
    for (SnomedDescription description : concept.getDescriptions()) {
        updateComponent(branchPath, SnomedComponentType.DESCRIPTION, description.getId(), pendingMoveUpdate).statusCode(204);
    }
    // XXX intentionally using the members() expand here to check duplication
    SnomedConcept pendingMoveConcept = getConcept(conceptId, "members(),descriptions(expand(members()))");
    // verify and collect inactivation indicator members
    SnomedReferenceSetMember conceptInactivationIndicatorMember = getIndicatorMember(pendingMoveConcept, Concepts.REFSET_CONCEPT_INACTIVITY_INDICATOR);
    SnomedReferenceSetMember fsnInactivationIndicatorMember = null;
    SnomedReferenceSetMember ptInactivationIndicatorMember = null;
    for (SnomedDescription description : pendingMoveConcept.getDescriptions()) {
        if (Concepts.FULLY_SPECIFIED_NAME.equals(description.getTypeId())) {
            fsnInactivationIndicatorMember = getIndicatorMember(description, Concepts.REFSET_DESCRIPTION_INACTIVITY_INDICATOR);
        } else if (Concepts.SYNONYM.equals(description.getTypeId())) {
            ptInactivationIndicatorMember = getIndicatorMember(description, Concepts.REFSET_DESCRIPTION_INACTIVITY_INDICATOR);
        } else {
            throw new UnsupportedOperationException();
        }
    }
    Map<?, ?> inactivationConceptRequest = ImmutableMap.builder().put("active", false).put("inactivationProperties", new InactivationProperties(Concepts.DUPLICATE, null)).put("commitComment", "Inactivated concept").build();
    updateComponent(branchPath, SnomedComponentType.CONCEPT, conceptId, inactivationConceptRequest).statusCode(204);
    // XXX intentionally using the members() expand here to check duplication/member issues
    SnomedConcept inactivatedConcept = getConcept(conceptId, "members(),descriptions(expand(members()))");
    SnomedReferenceSetMember afterInactivationConceptInactivationIndicatorMember = getIndicatorMember(inactivatedConcept, Concepts.REFSET_CONCEPT_INACTIVITY_INDICATOR);
    SnomedReferenceSetMember afterInactivationFsnInactivationIndicatorMember = null;
    SnomedReferenceSetMember afterInactivationPtInactivationIndicatorMember = null;
    for (SnomedDescription description : inactivatedConcept.getDescriptions()) {
        if (Concepts.FULLY_SPECIFIED_NAME.equals(description.getTypeId())) {
            afterInactivationFsnInactivationIndicatorMember = getIndicatorMember(description, Concepts.REFSET_DESCRIPTION_INACTIVITY_INDICATOR);
        } else if (Concepts.SYNONYM.equals(description.getTypeId())) {
            afterInactivationPtInactivationIndicatorMember = getIndicatorMember(description, Concepts.REFSET_DESCRIPTION_INACTIVITY_INDICATOR);
        } else {
            throw new UnsupportedOperationException();
        }
    }
    assertEquals(conceptInactivationIndicatorMember.getId(), afterInactivationConceptInactivationIndicatorMember.getId());
    assertEquals(null, afterInactivationConceptInactivationIndicatorMember.getEffectiveTime());
    assertEquals(false, afterInactivationConceptInactivationIndicatorMember.isReleased());
    assertEquals(Concepts.DUPLICATE, afterInactivationConceptInactivationIndicatorMember.getProperties().get(SnomedRf2Headers.FIELD_VALUE_ID));
    assertEquals(fsnInactivationIndicatorMember.getId(), afterInactivationFsnInactivationIndicatorMember.getId());
    assertEquals(null, afterInactivationFsnInactivationIndicatorMember.getEffectiveTime());
    assertEquals(false, afterInactivationFsnInactivationIndicatorMember.isReleased());
    assertEquals(Concepts.CONCEPT_NON_CURRENT, afterInactivationFsnInactivationIndicatorMember.getProperties().get(SnomedRf2Headers.FIELD_VALUE_ID));
    assertEquals(ptInactivationIndicatorMember.getId(), afterInactivationPtInactivationIndicatorMember.getId());
    assertEquals(null, afterInactivationPtInactivationIndicatorMember.getEffectiveTime());
    assertEquals(false, afterInactivationPtInactivationIndicatorMember.isReleased());
    assertEquals(Concepts.CONCEPT_NON_CURRENT, afterInactivationPtInactivationIndicatorMember.getProperties().get(SnomedRf2Headers.FIELD_VALUE_ID));
}

Example 3 with InactivationProperties

use of com.b2international.snowowl.snomed.core.domain.InactivationProperties in project snow-owl by b2ihealthcare.

the class SnomedDescriptionApiTest method updateIndicatorAfterInactivation.

@Test
public void updateIndicatorAfterInactivation() {
    String descriptionToInactivate = createNewDescription(branchPath);
    assertInactivation(branchPath, descriptionToInactivate, new InactivationProperties(Concepts.DUPLICATE, Collections.emptyList()));
    assertInactivation(branchPath, descriptionToInactivate, new InactivationProperties(Concepts.OUTDATED, Collections.emptyList()));
}

Example 4 with InactivationProperties

use of com.b2international.snowowl.snomed.core.domain.InactivationProperties in project snow-owl by b2ihealthcare.

the class SnomedDescriptionApiTest method updateInactivationIndicatorOnActiveReleasedDescription.

@Test
public void updateInactivationIndicatorOnActiveReleasedDescription() throws Exception {
    String descriptionToInactivate = createNewDescription(branchPath);
    assertInactivation(branchPath, descriptionToInactivate, new InactivationProperties(Concepts.PENDING_MOVE, Collections.emptyList()));
    // release component
    createCodeSystemAndVersion(branchPath, "SNOMEDCT-RELDESC-INACTIVATIONINDICATOR", "v1", LocalDate.parse("2018-07-01"));
    SnomedDescription description = assertInactivation(branchPath, descriptionToInactivate, new InactivationProperties(Concepts.CONCEPT_NON_CURRENT, Collections.emptyList())).extract().as(SnomedDescription.class);
    List<SnomedReferenceSetMember> inactivationIndicators = description.getMembers().stream().filter(member -> Concepts.REFSET_DESCRIPTION_INACTIVITY_INDICATOR.equals(member.getRefsetId())).collect(Collectors.toList());
    final SnomedReferenceSetMember inactivationIndicator = Iterables.getOnlyElement(inactivationIndicators);
    assertEquals(Concepts.CONCEPT_NON_CURRENT, inactivationIndicator.getProperties().get(SnomedRf2Headers.FIELD_VALUE_ID));
    assertNull(inactivationIndicator.getEffectiveTime());
}

Example 5 with InactivationProperties

use of com.b2international.snowowl.snomed.core.domain.InactivationProperties in project snow-owl by b2ihealthcare.

the class SnomedDescriptionApiTest method inactivateWithIndicator.

@Test
public void inactivateWithIndicator() {
    String descriptionId = createNewDescription(branchPath);
    assertInactivation(branchPath, descriptionId, new InactivationProperties(Concepts.DUPLICATE, Collections.emptyList()));
}