Examples with SnomedDescriptionIndexEntry com.b2international.snowowl.snomed.datastore.index.entry.SnomedDescriptionIndexEntry used on opensource projects

Example 6 with SnomedDescriptionIndexEntry

use of com.b2international.snowowl.snomed.datastore.index.entry.SnomedDescriptionIndexEntry in project snow-owl by b2ihealthcare.

the class ConceptIconIdUpdaterTest method indexChildConceptWithKnownId.

@Test
public void indexChildConceptWithKnownId() {
    final SnomedConceptDocument concept = concept().iconId(// intentionally unset icon ID before change processing
    null).build();
    final SnomedDescriptionIndexEntry fsn1 = description(concept.getId(), Concepts.FULLY_SPECIFIED_NAME, String.format(TEST_FSN, FINDING_SEMANTIC_TAG), singletonMap(Concepts.REFSET_LANGUAGE_TYPE_US, Acceptability.PREFERRED));
    indexRevision(MAIN, concept, fsn1);
    final SnomedConceptDocument childConcept = concept(Concepts.NAMESPACE_ROOT).iconId(// intentionally unset icon ID before change processing
    null).build();
    final SnomedDescriptionIndexEntry fsn2 = description(childConcept.getId(), Concepts.FULLY_SPECIFIED_NAME, String.format(TEST_FSN, "apple"), singletonMap(Concepts.REFSET_LANGUAGE_TYPE_US, Acceptability.PREFERRED));
    final SnomedRefSetMemberIndexEntry member = createOwlAxiom(childConcept.getId(), String.format("SubClassOf(:%s :%s)", childConcept.getId(), concept.getId())).build();
    stageNew(childConcept);
    stageNew(fsn2);
    stageNew(member);
    statedChangedConceptIds.add(Long.parseLong(concept.getId()));
    statedChangedConceptIds.add(Long.parseLong(childConcept.getId()));
    final ConceptChangeProcessor processor = process();
    final SnomedConceptDocument expectedChild = docWithDefaults(childConcept).semanticTags(ImmutableSortedSet.of("apple")).preferredDescriptions(ImmutableList.of(new SnomedDescriptionFragment(fsn2.getId(), fsn2.getTypeId(), fsn2.getTerm(), Concepts.REFSET_LANGUAGE_TYPE_US))).iconId(// icon ID must be the known concept's ID
    Concepts.NAMESPACE_ROOT).statedParents(Long.parseLong(concept.getId())).statedAncestors(IComponent.ROOT_IDL).activeMemberOf(singleton(Concepts.REFSET_OWL_AXIOM)).memberOf(singleton(Concepts.REFSET_OWL_AXIOM)).build();
    final Revision actualChild = Iterables.getOnlyElement(processor.getNewMappings().values());
    assertDocEquals(expectedChild, actualChild);
}

Example 7 with SnomedDescriptionIndexEntry

use of com.b2international.snowowl.snomed.datastore.index.entry.SnomedDescriptionIndexEntry in project snow-owl by b2ihealthcare.

the class DescriptionChangeProcessorTest method deleteAcceptableLanguageMember.

@Test
public void deleteAcceptableLanguageMember() throws Exception {
    // create description as dirty
    final SnomedDescriptionIndexEntry fsn = fsn(generateConceptId(), ImmutableMap.of(Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED, Concepts.REFSET_LANGUAGE_TYPE_US, Acceptability.ACCEPTABLE));
    final SnomedRefSetMemberIndexEntry acceptableInUs = langMember(fsn.getId(), Acceptability.ACCEPTABLE, Concepts.REFSET_LANGUAGE_TYPE_US);
    final SnomedRefSetMemberIndexEntry preferredInUk = langMember(fsn.getId(), Acceptability.PREFERRED, Concepts.REFSET_LANGUAGE_TYPE_UK);
    // index current revisions, so change processor can find them (both the description and the members)
    initRevisions(fsn, acceptableInUs, preferredInUk);
    stageRemove(acceptableInUs);
    process(processor);
    // expected that the new doc will have only the preferred acceptability
    final SnomedDescriptionIndexEntry expectedDoc = SnomedDescriptionIndexEntry.builder(fsn).acceptabilityMap(Collections.singletonMap(Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED)).build();
    final Revision currentDoc = Iterables.getOnlyElement(processor.getChangedMappings().values()).getNewRevision();
    assertDocEquals(expectedDoc, currentDoc);
    // XXX the deleted member handled by another processor
    assertEquals(0, processor.getNewMappings().size());
    assertEquals(0, processor.getDeletions().size());
}

Example 8 with SnomedDescriptionIndexEntry

use of com.b2international.snowowl.snomed.datastore.index.entry.SnomedDescriptionIndexEntry in project snow-owl by b2ihealthcare.

the class DescriptionChangeProcessorTest method changeLanguageMemberAcceptability.

@Test
public void changeLanguageMemberAcceptability() throws Exception {
    final SnomedDescriptionIndexEntry fsn = fsn(generateConceptId(), ImmutableMap.of(Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.ACCEPTABLE));
    final SnomedRefSetMemberIndexEntry acceptableInUk = langMember(fsn.getId(), Acceptability.ACCEPTABLE, Concepts.REFSET_LANGUAGE_TYPE_UK);
    initRevisions(fsn, acceptableInUk);
    // make the change
    stageChange(acceptableInUk, SnomedRefSetMemberIndexEntry.builder(acceptableInUk).field(SnomedRf2Headers.FIELD_ACCEPTABILITY_ID, Acceptability.PREFERRED.getConceptId()).build());
    process(processor);
    assertEquals(1, processor.getChangedMappings().size());
    // description doc must be reindexed with change acceptabilityMap
    final SnomedDescriptionIndexEntry expectedDoc = SnomedDescriptionIndexEntry.builder(fsn).acceptabilityMap(Collections.singletonMap(Concepts.REFSET_LANGUAGE_TYPE_UK, Acceptability.PREFERRED)).build();
    final Revision currentDoc = Iterables.getOnlyElement(processor.getChangedMappings().values()).getNewRevision();
    assertDocEquals(expectedDoc, currentDoc);
    assertEquals(0, processor.getNewMappings().size());
    assertEquals(0, processor.getDeletions().size());
}

Example 9 with SnomedDescriptionIndexEntry

use of com.b2international.snowowl.snomed.datastore.index.entry.SnomedDescriptionIndexEntry in project snow-owl by b2ihealthcare.

the class DescriptionChangeProcessorTest method deleteDescription.

@Test
public void deleteDescription() throws Exception {
    final SnomedDescriptionIndexEntry fsn = fsn(generateConceptId(), Collections.emptyMap());
    initRevisions(fsn);
    stageRemove(fsn);
    process(processor);
    assertThat(processor.getNewMappings()).isEmpty();
    assertThat(processor.getChangedMappings()).isEmpty();
    assertThat(processor.getDeletions()).isEmpty();
}

Example 10 with SnomedDescriptionIndexEntry

use of com.b2international.snowowl.snomed.datastore.index.entry.SnomedDescriptionIndexEntry in project snow-owl by b2ihealthcare.

the class DescriptionChangeProcessorTest method deleteMemberOfDescription.

@Test
public void deleteMemberOfDescription() {
    final SnomedDescriptionIndexEntry fsn = fsn(generateConceptId(), Collections.emptyMap());
    final String referringRefSetId = generateConceptId();
    final SnomedRefSetMemberIndexEntry member = simpleMember(fsn.getId(), referringRefSetId);
    initRevisions(SnomedDescriptionIndexEntry.builder(fsn).memberOf(Collections.singleton(referringRefSetId)).activeMemberOf(Collections.singleton(referringRefSetId)).build(), member);
    stageRemove(member);
    process(processor);
    final SnomedDescriptionIndexEntry expectedDoc = SnomedDescriptionIndexEntry.builder(fsn).build();
    final Revision currentDoc = Iterables.getOnlyElement(processor.getChangedMappings().values()).getNewRevision();
    assertDocEquals(expectedDoc, currentDoc);
    assertEquals(0, processor.getNewMappings().size());
    assertEquals(0, processor.getDeletions().size());
}