Examples with FolderWithMetadata com.epam.pipeline.entity.metadata.FolderWithMetadata used on opensource projects

Example 1 with FolderWithMetadata

use of com.epam.pipeline.entity.metadata.FolderWithMetadata in project cloud-pipeline by epam.

the class ParameterMapper method resolveConfigurations.

public List<ResolvedConfiguration> resolveConfigurations(AnalysisConfiguration<? extends AbstractRunConfigurationEntry> configuration) {
    FolderWithMetadata project = folderManager.getProject(configuration.getConfigurationId(), AclClass.CONFIGURATION);
    Map<String, PipeConfValue> projectData = project == null ? new HashMap<>() : project.getData();
    List<? extends AbstractRunConfigurationEntry> entries = configuration.getEntries();
    if (CollectionUtils.isEmpty(configuration.getEntitiesIds())) {
        return Collections.singletonList(resolveParameters(entries, projectData));
    }
    // In case of array references one entity may be expanded to
    // list of references entities, e.g. SampleSet is expanded
    // to list of Sample entities
    // TODO: The only reason to store it as map - is to add association to run
    // TODO: to initial entity, from which link comes. Find better solution.
    Map<Long, List<MetadataEntity>> targetEntities = fetchAndExpandInputEntities(configuration);
    // resolve all parameter references in configurations
    Map<Long, ResolvedConfiguration> resolvedConfigurations = targetEntities.values().stream().flatMap(Collection::stream).collect(Collectors.toMap(BaseEntity::getId, entity -> resolveParameters(entity, entries, projectData)));
    return targetEntities.entrySet().stream().map(idToEntities -> idToEntities.getValue().stream().map(entity -> {
        ResolvedConfiguration currentConfiguration = resolvedConfigurations.get(entity.getId());
        currentConfiguration.getAssociatedEntityIds().add(idToEntities.getKey());
        return currentConfiguration;
    }).collect(Collectors.toList())).flatMap(Collection::stream).collect(Collectors.toList());
}

Example 2 with FolderWithMetadata

use of com.epam.pipeline.entity.metadata.FolderWithMetadata in project cloud-pipeline by epam.

the class FirecloudRunner method runAnalysis.

@Override
public List<PipelineRun> runAnalysis(AnalysisConfiguration<FirecloudRunConfigurationEntry> configuration) {
    Assert.state(CollectionUtils.isNotEmpty(configuration.getEntitiesIds()), "Entities are required to run analysis in Firecloud");
    FolderWithMetadata project = folderManager.getProject(configuration.getConfigurationId(), AclClass.CONFIGURATION);
    Assert.notNull(project, "Project folder must be specified to run analysis in Firecloud.");
    List<Long> entities = parameterMapper.fetchAndExpandInputEntities(configuration).values().stream().flatMap(Collection::stream).map(BaseEntity::getId).collect(Collectors.toList());
    // TODO: after merge - add check that FC class is filled
    configuration.getEntries().forEach(this::validateFirecloudConfiguration);
    FirecloudConfiguration settings = buildFirecloudConfig(configuration.getRefreshToken());
    return configuration.getEntries().stream().map(entry -> runFirecloudAnalysis(settings, entry, configuration.getConfigurationId(), entities, project.getId())).collect(Collectors.toList());
}

Example 3 with FolderWithMetadata

use of com.epam.pipeline.entity.metadata.FolderWithMetadata in project cloud-pipeline by epam.

the class FolderDaoTest method testLoadParentFolders.

@Test
@Transactional(propagation = Propagation.REQUIRES_NEW, rollbackFor = Exception.class)
public void testLoadParentFolders() {
    Folder folder = getFolder();
    Folder folder1 = createFolderWithParent(folder, "folder1");
    Folder folder2 = createFolderWithParent(folder1, "folder2");
    // folder that exists but mustn't be included in actualFolders
    createFolderWithParent(folder1, "folder3");
    List<Folder> expectedFolders = Stream.of(folder, folder1, folder2).collect(Collectors.toList());
    List<FolderWithMetadata> expectedFoldersWithMetadata = createObjectMetadata(expectedFolders);
    List<FolderWithMetadata> actualFoldersWithMetadata = folderDao.loadParentFolders(folder2.getId());
    assertTrue(CollectionUtils.isEqualCollection(actualFoldersWithMetadata, expectedFoldersWithMetadata));
    List<Folder> actualFolders = folderDao.loadFolderWithParents(folder2.getId());
    assertTrue(CollectionUtils.isEqualCollection(actualFolders, expectedFolders));
}

Example 4 with FolderWithMetadata

use of com.epam.pipeline.entity.metadata.FolderWithMetadata in project cloud-pipeline by epam.

the class FolderDaoTest method convertToFolderWithMetadata.

private FolderWithMetadata convertToFolderWithMetadata(Folder folder) {
    FolderWithMetadata folderWithMetadata = new FolderWithMetadata();
    folderWithMetadata.setId(folder.getId());
    folderWithMetadata.setParentId(folder.getParentId());
    folderWithMetadata.setName(folder.getName());
    folderWithMetadata.setOwner(folder.getOwner());
    return folderWithMetadata;
}

Example 5 with FolderWithMetadata

use of com.epam.pipeline.entity.metadata.FolderWithMetadata in project cloud-pipeline by epam.

the class FolderManagerGetProjectTest method getProjectShouldWorkWithoutParent.

@Test
public void getProjectShouldWorkWithoutParent() {
    Mockito.when(entityManager.load(Matchers.any(AclClass.class), Matchers.any(Long.class))).thenReturn(folder1);
    FolderWithMetadata project = folderManager.getProject(folder1.getId(), AclClass.FOLDER);
    assertNull(project);
}