Examples with PipeConfValue com.epam.pipeline.entity.metadata.PipeConfValue used on opensource projects

Example 6 with PipeConfValue

use of com.epam.pipeline.entity.metadata.PipeConfValue in project cloud-pipeline by epam.

the class MetadataEntityConverterTest method shouldFailWithMissingColumnInData.

@Test(expected = IllegalStateException.class)
public void shouldFailWithMissingColumnInData() {
    Map<String, PipeConfValue> participantData1 = new HashMap<>();
    participantData1.put(TEST_ARGUMENT1, new PipeConfValue(STRING_TYPE, TEST_VALUE_1));
    participantData1.put(TEST_ARGUMENT2, new PipeConfValue(STRING_TYPE, "F"));
    MetadataEntity participant1 = getEntity(participantClass, PARTICIPANT_ENTITY_ID1, participantData1);
    Map<String, PipeConfValue> participantData2 = new HashMap<>();
    participantData2.put(TEST_ARGUMENT2, new PipeConfValue(STRING_TYPE, "M"));
    MetadataEntity participant2 = getEntity(participantClass, PARTICIPANT_ENTITY_ID2, participantData2);
    List<MetadataEntity> entities = new ArrayList<>();
    entities.add(participant1);
    entities.add(participant2);
    MetadataEntityConverter.convert(entities);
}

Example 7 with PipeConfValue

use of com.epam.pipeline.entity.metadata.PipeConfValue in project cloud-pipeline by epam.

the class MetadataEntityConverterTest method shouldFailIfPairSetWithoutPairs.

@Test(expected = IllegalStateException.class)
public void shouldFailIfPairSetWithoutPairs() {
    Map<String, PipeConfValue> pairSetData = new HashMap<>();
    pairSetData.put(TEST_ARGUMENT1, new PipeConfValue(STRING_TYPE, TEST_VALUE_2));
    MetadataEntity pairSet = getEntity(pairSetClass, "HCC_pairs", pairSetData);
    MetadataEntityConverter.convert(Collections.singletonList(pairSet));
}

Example 8 with PipeConfValue

use of com.epam.pipeline.entity.metadata.PipeConfValue in project cloud-pipeline by epam.

the class MetadataEntityConverterTest method shouldFailIfSampleSetWithoutSamples.

@Test(expected = IllegalStateException.class)
public void shouldFailIfSampleSetWithoutSamples() {
    Map<String, PipeConfValue> sampleSetData = new HashMap<>();
    sampleSetData.put(TEST_ARGUMENT1, new PipeConfValue(STRING_TYPE, TEST_VALUE_2));
    MetadataEntity sampleSet = getEntity(sampleSetClass, "HCC_samples", sampleSetData);
    MetadataEntityConverter.convert(Collections.singletonList(sampleSet));
}

Example 9 with PipeConfValue

use of com.epam.pipeline.entity.metadata.PipeConfValue in project cloud-pipeline by epam.

the class MetadataEntityConverterTest method shouldFailIfPairWithoutControlSampleAttribute.

@Test(expected = IllegalArgumentException.class)
public void shouldFailIfPairWithoutControlSampleAttribute() {
    Map<String, PipeConfValue> pairData = new HashMap<>();
    pairData.put(PARTICIPANT_TYPE_NAME, new PipeConfValue(PARTICIPANT_TYPE_NAME, PARTICIPANT_ENTITY_ID1));
    pairData.put(CASE_SAMPLE_ARGUMENT, new PipeConfValue(SAMPLE_ATTRIBUTE_TYPE, SAMPLE_ENTITY_ID2));
    MetadataEntity pair = getEntity(pairClass, PAIR_ENTITY_ID1, pairData);
    MetadataEntityConverter.convert(Collections.singletonList(pair));
}

Example 10 with PipeConfValue

use of com.epam.pipeline.entity.metadata.PipeConfValue in project cloud-pipeline by epam.

the class MetadataEntityConverterTest method shouldFailWithInconsistentData.

@Test(expected = IllegalStateException.class)
public void shouldFailWithInconsistentData() {
    Map<String, PipeConfValue> participantData1 = new HashMap<>();
    participantData1.put(TEST_ARGUMENT1, new PipeConfValue(STRING_TYPE, TEST_VALUE_1));
    MetadataEntity participant1 = getEntity(participantClass, PARTICIPANT_ENTITY_ID1, participantData1);
    Map<String, PipeConfValue> participantData2 = new HashMap<>();
    participantData2.put(TEST_ARGUMENT2, new PipeConfValue(STRING_TYPE, "M"));
    MetadataEntity participant2 = getEntity(participantClass, PARTICIPANT_ENTITY_ID2, participantData2);
    List<MetadataEntity> entities = new ArrayList<>();
    entities.add(participant1);
    entities.add(participant2);
    MetadataEntityConverter.convert(entities);
}