Examples with Calibration com.eveningoutpost.dexdrip.Models.Calibration used on opensource projects

Example 26 with Calibration

use of com.eveningoutpost.dexdrip.Models.Calibration in project xDrip-plus by jamorham.

the class AddCalibration method automatedCalibration.

// jamorham - receive automated calibration via broadcast intent / tasker receiver
public synchronized void automatedCalibration() {
    final PowerManager.WakeLock wl = JoH.getWakeLock("xdrip-autocalib", 60000);
    Log.d(TAG, "Auto calibration...");
    final Bundle extras = getIntent().getExtras();
    if (extras != null) {
        final String string_value = extras.getString("bg_string");
        final String bg_age = extras.getString("bg_age");
        final String from_external = extras.getString("from_external", "false");
        final String from_interactive = extras.getString("from_interactive", "false");
        final String note_only = extras.getString("note_only", "false");
        final String allow_undo = extras.getString("allow_undo", "false");
        if ((Sensor.isActive() || Home.get_follower())) {
            if (!TextUtils.isEmpty(string_value)) {
                if (!TextUtils.isEmpty(bg_age)) {
                    final double calValue = Double.parseDouble(string_value);
                    new Thread() {

                        @Override
                        public void run() {
                            final PowerManager.WakeLock wlt = JoH.getWakeLock("xdrip-autocalibt", 60000);
                            long bgAgeNumber = Long.parseLong(bg_age);
                            if ((bgAgeNumber >= 0) && (bgAgeNumber < 86400)) {
                                long localEstimatedInterstitialLagSeconds = 0;
                                // adjust timestamp for this if we can
                                if (bgAgeNumber > estimatedInterstitialLagSeconds) {
                                    localEstimatedInterstitialLagSeconds = estimatedInterstitialLagSeconds;
                                }
                                if (calValue > 0) {
                                    if (lastExternalCalibrationValue == 0) {
                                        lastExternalCalibrationValue = PersistentStore.getDouble(LAST_EXTERNAL_CALIBRATION);
                                    }
                                    if (calValue != lastExternalCalibrationValue) {
                                        if (!Home.get_follower()) {
                                            lastExternalCalibrationValue = calValue;
                                            PersistentStore.setDouble(LAST_EXTERNAL_CALIBRATION, calValue);
                                            final Calibration calibration = Calibration.create(calValue, bgAgeNumber, getApplicationContext(), (note_only.equals("true")), localEstimatedInterstitialLagSeconds);
                                            if ((calibration != null) && allow_undo.equals("true")) {
                                                UndoRedo.addUndoCalibration(calibration.uuid);
                                            }
                                        // startWatchUpdaterService(getApplicationContext(), WatchUpdaterService.ACTION_SYNC_CALIBRATION, TAG);
                                        } else {
                                            // follower sends the calibration data onwards only if sourced from interactive request
                                            if (from_interactive.equals("true")) {
                                                Log.d(TAG, "Interactive calibration and we are follower so sending to master");
                                                sendFollowerCalibration(calValue, bgAgeNumber);
                                            } else {
                                                Log.d(TAG, "Not an interactive calibration so not sending to master");
                                            }
                                        }
                                    } else {
                                        Log.w(TAG, "Ignoring Remote calibration value as identical to last one: " + calValue);
                                    }
                                    if (from_external.equals("true")) {
                                        Log.d("jamorham calib", "Relaying tasker pushed calibration");
                                        GcmActivity.pushCalibration(string_value, bg_age);
                                    }
                                }
                            } else {
                                Log.wtf("CALERROR", "bg age either in future or older than 1 day: " + bgAgeNumber);
                            }
                            JoH.releaseWakeLock(wlt);
                        }
                    }.start();
                } else {
                    Log.w("CALERROR", "ERROR during automated calibration - no valid bg age");
                }
            } else {
                Log.w("CALERROR", "ERROR during automated calibration - no valid value");
            }
        } else {
            Log.w("CALERROR", "ERROR during automated calibration - no active sensor");
        }
        JoH.releaseWakeLock(wl);
        finish();
    }
}

Example 27 with Calibration

use of com.eveningoutpost.dexdrip.Models.Calibration in project xDrip-plus by jamorham.

the class AddCalibration method addListenerOnButton.

public void addListenerOnButton() {
    button = (Button) findViewById(R.id.save_calibration_button);
    button.setOnClickListener(new View.OnClickListener() {

        public void onClick(final View v) {
            if ((Sensor.isActive() || Home.get_follower())) {
                final EditText value = (EditText) findViewById(R.id.bg_value);
                final String string_value = value.getText().toString();
                if (!TextUtils.isEmpty(string_value)) {
                    try {
                        final double calValue = JoH.tolerantParseDouble(string_value);
                        if (!Home.get_follower()) {
                            Calibration calibration = Calibration.create(calValue, getApplicationContext());
                            if (calibration != null) {
                                UndoRedo.addUndoCalibration(calibration.uuid);
                            // startWatchUpdaterService(v.getContext(), WatchUpdaterService.ACTION_SYNC_CALIBRATION, TAG);
                            } else {
                                Log.e(TAG, "Calibration creation resulted in null");
                                JoH.static_toast_long("Could not create calibration!");
                            // TODO probably follower must ensure it has a valid sensor regardless..
                            }
                        } else if (Home.get_follower()) {
                            // Sending the data for the master to update the main tables.
                            // default offset is 0
                            sendFollowerCalibration(calValue, 0);
                        }
                        Intent tableIntent = new Intent(v.getContext(), Home.class);
                        startActivity(tableIntent);
                    } catch (NumberFormatException e) {
                        Log.e(TAG, "Number format exception ", e);
                        Home.toaststatic("Got error parsing number in calibration");
                    }
                    // }
                    // }.start();
                    finish();
                } else {
                    value.setError("Calibration Can Not be blank");
                }
            } else {
                Log.w("CALERROR", "Sensor is not active, cannot calibrate");
            }
        }
    });
}

Example 28 with Calibration

use of com.eveningoutpost.dexdrip.Models.Calibration in project xDrip-plus by jamorham.

the class NightscoutUploader method doMongoUpload.

private boolean doMongoUpload(SharedPreferences prefs, List<BgReading> glucoseDataSets, List<Calibration> meterRecords, List<Calibration> calRecords) {
    final SimpleDateFormat format = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss.SSSZ", Locale.US);
    format.setTimeZone(TimeZone.getDefault());
    final String dbURI = prefs.getString("cloud_storage_mongodb_uri", null);
    if (dbURI != null) {
        try {
            final URI uri = new URI(dbURI.trim());
            if ((uri.getHost().startsWith("192.168.")) && prefs.getBoolean("skip_lan_uploads_when_no_lan", true) && (!JoH.isLANConnected())) {
                Log.d(TAG, "Skipping mongo upload to: " + dbURI + " due to no LAN connection");
                return false;
            }
        } catch (URISyntaxException e) {
            UserError.Log.e(TAG, "Invalid mongo URI: " + e);
        }
    }
    final String collectionName = prefs.getString("cloud_storage_mongodb_collection", null);
    final String dsCollectionName = prefs.getString("cloud_storage_mongodb_device_status_collection", "devicestatus");
    if (dbURI != null && collectionName != null) {
        try {
            // connect to db
            MongoClientURI uri = new MongoClientURI(dbURI.trim() + "?socketTimeoutMS=180000");
            MongoClient client = new MongoClient(uri);
            // get db
            DB db = client.getDB(uri.getDatabase());
            // get collection
            DBCollection dexcomData = db.getCollection(collectionName.trim());
            try {
                Log.i(TAG, "The number of EGV records being sent to MongoDB is " + glucoseDataSets.size());
                for (BgReading record : glucoseDataSets) {
                    // make db object
                    BasicDBObject testData = new BasicDBObject();
                    testData.put("device", "xDrip-" + prefs.getString("dex_collection_method", "BluetoothWixel"));
                    if (record != null) {
                        // KS
                        testData.put("date", record.timestamp);
                        testData.put("dateString", format.format(record.timestamp));
                        testData.put("sgv", Math.round(record.calculated_value));
                        testData.put("direction", record.slopeName());
                        testData.put("type", "sgv");
                        testData.put("filtered", record.ageAdjustedFiltered() * 1000);
                        testData.put("unfiltered", record.usedRaw() * 1000);
                        testData.put("rssi", 100);
                        testData.put("noise", record.noiseValue());
                        dexcomData.insert(testData, WriteConcern.UNACKNOWLEDGED);
                    } else
                        Log.e(TAG, "MongoDB BG record is null.");
                }
                Log.i(TAG, "The number of MBG records being sent to MongoDB is " + meterRecords.size());
                for (Calibration meterRecord : meterRecords) {
                    // make db object
                    BasicDBObject testData = new BasicDBObject();
                    testData.put("device", "xDrip-" + prefs.getString("dex_collection_method", "BluetoothWixel"));
                    testData.put("type", "mbg");
                    testData.put("date", meterRecord.timestamp);
                    testData.put("dateString", format.format(meterRecord.timestamp));
                    testData.put("mbg", meterRecord.bg);
                    dexcomData.insert(testData, WriteConcern.UNACKNOWLEDGED);
                }
                for (Calibration calRecord : calRecords) {
                    // do not upload undefined slopes
                    if (calRecord.slope == 0d)
                        break;
                    // make db object
                    BasicDBObject testData = new BasicDBObject();
                    testData.put("device", "xDrip-" + prefs.getString("dex_collection_method", "BluetoothWixel"));
                    testData.put("date", calRecord.timestamp);
                    testData.put("dateString", format.format(calRecord.timestamp));
                    if (calRecord.check_in) {
                        testData.put("slope", (calRecord.first_slope));
                        testData.put("intercept", ((calRecord.first_intercept)));
                        testData.put("scale", calRecord.first_scale);
                    } else {
                        testData.put("slope", (1000 / calRecord.slope));
                        testData.put("intercept", ((calRecord.intercept * -1000) / (calRecord.slope)));
                        testData.put("scale", 1);
                    }
                    testData.put("type", "cal");
                    dexcomData.insert(testData, WriteConcern.UNACKNOWLEDGED);
                }
                // TODO: quick port from original code, revisit before release
                DBCollection dsCollection = db.getCollection(dsCollectionName);
                BasicDBObject devicestatus = new BasicDBObject();
                devicestatus.put("uploaderBattery", getBatteryLevel());
                devicestatus.put("created_at", format.format(System.currentTimeMillis()));
                dsCollection.insert(devicestatus, WriteConcern.UNACKNOWLEDGED);
                // treatments mongo sync using unified queue
                Log.d(TAG, "Starting treatments mongo direct");
                final long THIS_QUEUE = UploaderQueue.MONGO_DIRECT;
                final DBCollection treatmentDb = db.getCollection("treatments");
                final List<UploaderQueue> tups = UploaderQueue.getPendingbyType(Treatments.class.getSimpleName(), THIS_QUEUE);
                if (tups != null) {
                    for (UploaderQueue up : tups) {
                        if ((up.action.equals("insert") || (up.action.equals("update")))) {
                            Treatments treatment = Treatments.byid(up.reference_id);
                            if (treatment != null) {
                                BasicDBObject record = new BasicDBObject();
                                record.put("timestamp", treatment.timestamp);
                                record.put("eventType", treatment.eventType);
                                record.put("enteredBy", treatment.enteredBy);
                                if (treatment.notes != null)
                                    record.put("notes", treatment.notes);
                                record.put("uuid", treatment.uuid);
                                record.put("carbs", treatment.carbs);
                                record.put("insulin", treatment.insulin);
                                record.put("created_at", treatment.created_at);
                                final BasicDBObject searchQuery = new BasicDBObject().append("uuid", treatment.uuid);
                                // treatmentDb.insert(record, WriteConcern.UNACKNOWLEDGED);
                                Log.d(TAG, "Sending upsert for: " + treatment.toJSON());
                                treatmentDb.update(searchQuery, record, true, false);
                            } else {
                                Log.d(TAG, "Got null for treatment id: " + up.reference_id);
                            }
                            up.completed(THIS_QUEUE);
                        } else if (up.action.equals("delete")) {
                            if (up.reference_uuid != null) {
                                Log.d(TAG, "Processing treatment delete mongo sync for: " + up.reference_uuid);
                                final BasicDBObject searchQuery = new BasicDBObject().append("uuid", up.reference_uuid);
                                Log.d(TAG, treatmentDb.remove(searchQuery, WriteConcern.UNACKNOWLEDGED).toString());
                            }
                            up.completed(THIS_QUEUE);
                        } else {
                            Log.e(TAG, "Unsupported operation type for treatment: " + up.action);
                        }
                    }
                    Log.d(TAG, "Processed " + tups.size() + " Treatment mongo direct upload records");
                }
                client.close();
                failurecount = 0;
                return true;
            } catch (Exception e) {
                Log.e(TAG, "Unable to upload data to mongo " + e.getMessage());
                failurecount++;
                if (failurecount > 4) {
                    Home.toaststaticnext("Mongo " + failurecount + " up fails: " + e.getMessage().substring(0, 51));
                }
            } finally {
                if (client != null) {
                    client.close();
                }
            }
        } catch (Exception e) {
            Log.e(TAG, "Unable to upload data to mongo " + e.getMessage());
        }
    }
    return false;
}

Example 29 with Calibration

use of com.eveningoutpost.dexdrip.Models.Calibration in project xDrip-plus by jamorham.

the class NightscoutUploader method doRESTUploadTo.

private void doRESTUploadTo(NightscoutService nightscoutService, String secret, List<BgReading> glucoseDataSets, List<BloodTest> meterRecords, List<Calibration> calRecords) throws Exception {
    final JSONArray array = new JSONArray();
    for (BgReading record : glucoseDataSets) {
        populateV1APIBGEntry(array, record);
    }
    for (BloodTest record : meterRecords) {
        populateV1APIMeterReadingEntry(array, record);
    }
    for (Calibration record : calRecords) {
        final BloodTest dupe = BloodTest.getForPreciseTimestamp(record.timestamp, 60000);
        if (dupe == null) {
            // also add calibrations as meter records
            populateV1APIMeterReadingEntry(array, record);
        } else {
            Log.d(TAG, "Found duplicate blood test entry for this calibration record: " + record.bg + " vs " + dupe.mgdl + " mg/dl");
        }
        populateV1APICalibrationEntry(array, record);
    }
    if (array.length() > 0) {
        // KS
        final RequestBody body = RequestBody.create(MediaType.parse("application/json"), array.toString());
        final Response<ResponseBody> r = nightscoutService.upload(secret, body).execute();
        if (!r.isSuccess())
            throw new UploaderException(r.message(), r.code());
        checkGzipSupport(r);
        try {
            postDeviceStatus(nightscoutService, secret);
        } catch (Exception e) {
            Log.e(TAG, "Ignoring devicestatus post exception: " + e);
        }
    }
    try {
        if (Pref.getBooleanDefaultFalse("send_treatments_to_nightscout")) {
            postTreatments(nightscoutService, secret);
        } else {
            Log.d(TAG, "Skipping treatment upload due to preference disabled");
        }
    } catch (Exception e) {
        Log.e(TAG, "Exception uploading REST API treatments: " + e.getMessage());
        if (e.getMessage().equals("Not Found")) {
            final String msg = "Please ensure careportal plugin is enabled on nightscout for treatment upload!";
            Log.wtf(TAG, msg);
            Home.toaststaticnext(msg);
            handleRestFailure(msg);
        }
    }
    // TODO in the future we may want to merge these in to a single post
    if (Pref.getBooleanDefaultFalse("use_pebble_health") && (Home.get_engineering_mode())) {
        try {
            postHeartRate(nightscoutService, secret);
            postStepsCount(nightscoutService, secret);
            postMotionTracking(nightscoutService, secret);
        } catch (Exception e) {
            if (JoH.ratelimit("heartrate-upload-exception", 3600)) {
                Log.e(TAG, "Exception uploading REST API heartrate: " + e.getMessage());
            }
        }
    }
}

Example 30 with Calibration

use of com.eveningoutpost.dexdrip.Models.Calibration in project xDrip-plus by jamorham.

the class UploaderTask method doInBackground.

public Void doInBackground(String... urls) {
    try {
        final List<Long> circuits = new ArrayList<>();
        final List<String> types = new ArrayList<>();
        types.add(BgReading.class.getSimpleName());
        types.add(Calibration.class.getSimpleName());
        types.add(BloodTest.class.getSimpleName());
        types.add(Treatments.class.getSimpleName());
        if (Pref.getBooleanDefaultFalse("wear_sync")) {
            circuits.add(UploaderQueue.WATCH_WEARAPI);
        }
        if (Pref.getBooleanDefaultFalse("cloud_storage_mongodb_enable")) {
            circuits.add(UploaderQueue.MONGO_DIRECT);
        }
        if (Pref.getBooleanDefaultFalse("cloud_storage_api_enable")) {
            if ((Pref.getBoolean("cloud_storage_api_use_mobile", true) || (JoH.isLANConnected()))) {
                circuits.add(UploaderQueue.NIGHTSCOUT_RESTAPI);
            } else {
                Log.e(TAG, "Skipping Nightscout upload due to mobile data only");
            }
        }
        if (Pref.getBooleanDefaultFalse("cloud_storage_influxdb_enable")) {
            circuits.add(UploaderQueue.INFLUXDB_RESTAPI);
        }
        for (long THIS_QUEUE : circuits) {
            final List<BgReading> bgReadings = new ArrayList<>();
            final List<Calibration> calibrations = new ArrayList<>();
            final List<BloodTest> bloodtests = new ArrayList<>();
            final List<Treatments> treatmentsAdd = new ArrayList<>();
            final List<String> treatmentsDel = new ArrayList<>();
            final List<UploaderQueue> items = new ArrayList<>();
            for (String type : types) {
                final List<UploaderQueue> bgups = UploaderQueue.getPendingbyType(type, THIS_QUEUE);
                if (bgups != null) {
                    for (UploaderQueue up : bgups) {
                        switch(up.action) {
                            case "insert":
                            case "update":
                            case "create":
                                items.add(up);
                                if (type.equals(BgReading.class.getSimpleName())) {
                                    final BgReading this_bg = BgReading.byid(up.reference_id);
                                    if (this_bg != null) {
                                        bgReadings.add(this_bg);
                                    } else {
                                        Log.wtf(TAG, "BgReading with ID: " + up.reference_id + " appears to have been deleted");
                                    }
                                } else if (type.equals(Calibration.class.getSimpleName())) {
                                    final Calibration this_cal = Calibration.byid(up.reference_id);
                                    if ((this_cal != null) && (this_cal.isValid())) {
                                        calibrations.add(this_cal);
                                    } else {
                                        Log.wtf(TAG, "Calibration with ID: " + up.reference_id + " appears to have been deleted");
                                    }
                                } else if (type.equals(BloodTest.class.getSimpleName())) {
                                    final BloodTest this_bt = BloodTest.byid(up.reference_id);
                                    if (this_bt != null) {
                                        bloodtests.add(this_bt);
                                    } else {
                                        Log.wtf(TAG, "Bloodtest with ID: " + up.reference_id + " appears to have been deleted");
                                    }
                                } else if (type.equals(Treatments.class.getSimpleName())) {
                                    final Treatments this_treat = Treatments.byid(up.reference_id);
                                    if (this_treat != null) {
                                        treatmentsAdd.add(this_treat);
                                    } else {
                                        Log.wtf(TAG, "Treatments with ID: " + up.reference_id + " appears to have been deleted");
                                    }
                                }
                                break;
                            case "delete":
                                if ((THIS_QUEUE == UploaderQueue.WATCH_WEARAPI || THIS_QUEUE == UploaderQueue.NIGHTSCOUT_RESTAPI) && type.equals(Treatments.class.getSimpleName())) {
                                    items.add(up);
                                    Log.wtf(TAG, "Delete Treatments with ID: " + up.reference_uuid);
                                    treatmentsDel.add(up.reference_uuid);
                                } else if (up.reference_uuid != null) {
                                    Log.d(TAG, UploaderQueue.getCircuitName(THIS_QUEUE) + " delete not yet implemented: " + up.reference_uuid);
                                    // mark as completed so as not to tie up the queue for now
                                    up.completed(THIS_QUEUE);
                                }
                                break;
                            default:
                                Log.e(TAG, "Unsupported operation type for " + type + " " + up.action);
                                break;
                        }
                    }
                }
            }
            if ((bgReadings.size() > 0) || (calibrations.size() > 0) || (bloodtests.size() > 0) || (treatmentsAdd.size() > 0 || treatmentsDel.size() > 0) || (UploaderQueue.getPendingbyType(Treatments.class.getSimpleName(), THIS_QUEUE, 1).size() > 0)) {
                Log.d(TAG, UploaderQueue.getCircuitName(THIS_QUEUE) + " Processing: " + bgReadings.size() + " BgReadings and " + calibrations.size() + " Calibrations " + bloodtests.size() + " bloodtests " + treatmentsAdd.size() + " treatmentsAdd " + treatmentsDel.size() + " treatmentsDel");
                boolean uploadStatus = false;
                if (THIS_QUEUE == UploaderQueue.MONGO_DIRECT) {
                    final NightscoutUploader uploader = new NightscoutUploader(xdrip.getAppContext());
                    uploadStatus = uploader.uploadMongo(bgReadings, calibrations, calibrations);
                } else if (THIS_QUEUE == UploaderQueue.NIGHTSCOUT_RESTAPI) {
                    final NightscoutUploader uploader = new NightscoutUploader(xdrip.getAppContext());
                    uploadStatus = uploader.uploadRest(bgReadings, bloodtests, calibrations);
                } else if (THIS_QUEUE == UploaderQueue.INFLUXDB_RESTAPI) {
                    final InfluxDBUploader influxDBUploader = new InfluxDBUploader(xdrip.getAppContext());
                    uploadStatus = influxDBUploader.upload(bgReadings, calibrations, calibrations);
                } else if (THIS_QUEUE == UploaderQueue.WATCH_WEARAPI) {
                    uploadStatus = WatchUpdaterService.sendWearUpload(bgReadings, calibrations, bloodtests, treatmentsAdd, treatmentsDel);
                }
                // TODO some kind of fail counter?
                if (uploadStatus) {
                    for (UploaderQueue up : items) {
                        // approve all types for this queue
                        up.completed(THIS_QUEUE);
                    }
                    Log.d(TAG, UploaderQueue.getCircuitName(THIS_QUEUE) + " Marking: " + items.size() + " Items as successful");
                    if (PersistentStore.getBoolean(BACKFILLING_BOOSTER)) {
                        Log.d(TAG, "Scheduling boosted repeat query");
                        SyncService.startSyncService(2000);
                    }
                }
            } else {
                Log.d(TAG, "Nothing to upload for: " + UploaderQueue.getCircuitName(THIS_QUEUE));
                if (PersistentStore.getBoolean(BACKFILLING_BOOSTER)) {
                    PersistentStore.setBoolean(BACKFILLING_BOOSTER, false);
                    Log.d(TAG, "Switched off backfilling booster");
                }
            }
        }
    } catch (Exception e) {
        Log.e(TAG, "caught exception", e);
        exception = e;
        return null;
    }
    return null;
}