use of com.eveningoutpost.dexdrip.calibrations.CalibrationAbstract in project xDrip by NightscoutFoundation.
the class Home method extraStatusLine.
@NonNull
public static String extraStatusLine() {
final StringBuilder extraline = new StringBuilder();
final Calibration lastCalibration = Calibration.lastValid();
if (Pref.getBoolean("status_line_calibration_long", false) && lastCalibration != null) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append("slope = ");
extraline.append(String.format("%.2f", lastCalibration.slope));
extraline.append(' ');
extraline.append("inter = ");
extraline.append(String.format("%.2f", lastCalibration.intercept));
}
if (Pref.getBoolean("status_line_calibration_short", false) && lastCalibration != null) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append("s:");
extraline.append(String.format("%.2f", lastCalibration.slope));
extraline.append(' ');
extraline.append("i:");
extraline.append(String.format("%.2f", lastCalibration.intercept));
}
if (Pref.getBoolean("status_line_avg", false) || Pref.getBoolean("status_line_a1c_dcct", false) || Pref.getBoolean("status_line_a1c_ifcc", false) || Pref.getBoolean("status_line_in", false) || Pref.getBoolean("status_line_high", false) || Pref.getBoolean("status_line_low", false) || Pref.getBoolean("status_line_stdev", false) || Pref.getBoolean("status_line_carbs", false) || Pref.getBoolean("status_line_insulin", false) || Pref.getBoolean("status_line_royce_ratio", false) || Pref.getBoolean("status_line_accuracy", false) || Pref.getBoolean("status_line_capture_percentage", false) || Pref.getBoolean("status_line_pump_reservoir", false)) {
final StatsResult statsResult = new StatsResult(Pref.getInstance(), Pref.getBooleanDefaultFalse("extra_status_stats_24h"));
if (Pref.getBoolean("status_line_avg", false)) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append(statsResult.getAverageUnitised());
}
if (Pref.getBoolean("status_line_a1c_dcct", false)) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append(statsResult.getA1cDCCT());
}
if (Pref.getBoolean("status_line_a1c_ifcc", false)) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append(statsResult.getA1cIFCC());
}
if (Pref.getBoolean("status_line_in", false)) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append(statsResult.getInPercentage());
}
if (Pref.getBoolean("status_line_high", false)) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append(statsResult.getHighPercentage());
}
if (Pref.getBoolean("status_line_low", false)) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append(statsResult.getLowPercentage());
}
if (Pref.getBoolean("status_line_stdev", false)) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append(statsResult.getStdevUnitised());
}
if (Pref.getBoolean("status_line_carbs", false)) {
if (extraline.length() != 0)
extraline.append(' ');
// extraline.append("Carbs: " + statsResult.getTotal_carbs());
extraline.append("Carbs:" + Math.round(statsResult.getTotal_carbs()));
}
if (Pref.getBoolean("status_line_insulin", false)) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append("U:" + JoH.qs(statsResult.getTotal_insulin(), 2));
}
if (Pref.getBoolean("status_line_royce_ratio", false)) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append("C/I:" + JoH.qs(statsResult.getRatio(), 2));
}
if (Pref.getBoolean("status_line_capture_percentage", false)) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append(statsResult.getCapturePercentage(false));
}
if (Pref.getBoolean("status_line_accuracy", false)) {
final long accuracy_period = DAY_IN_MS * 3;
if (extraline.length() != 0)
extraline.append(' ');
final String accuracy_report = Accuracy.evaluateAccuracy(accuracy_period);
if ((accuracy_report != null) && (accuracy_report.length() > 0)) {
extraline.append(accuracy_report);
} else {
final String accuracy = BloodTest.evaluateAccuracy(accuracy_period);
extraline.append(((accuracy != null) ? " " + accuracy : ""));
}
}
if (Pref.getBoolean("status_line_pump_reservoir", false)) {
if (extraline.length() != 0)
extraline.append(' ');
extraline.append(PumpStatus.getBolusIoBString());
extraline.append(PumpStatus.getReservoirString());
extraline.append(PumpStatus.getBatteryString());
}
}
if (Pref.getBoolean("extra_status_calibration_plugin", false)) {
// make sure do this only once
final CalibrationAbstract plugin = getCalibrationPluginFromPreferences();
if (plugin != null) {
final CalibrationAbstract.CalibrationData pcalibration = plugin.getCalibrationData();
// not tested on the widget yet
if (extraline.length() > 0)
extraline.append("\n");
if (pcalibration != null)
extraline.append("(" + plugin.getAlgorithmName() + ") s:" + JoH.qs(pcalibration.slope, 2) + " i:" + JoH.qs(pcalibration.intercept, 2));
BgReading bgReading = BgReading.last();
if (bgReading != null) {
final boolean doMgdl = Pref.getString("units", "mgdl").equals("mgdl");
extraline.append(" \u21D2 " + BgGraphBuilder.unitized_string(plugin.getGlucoseFromSensorValue(bgReading.age_adjusted_raw_value), doMgdl) + " " + BgGraphBuilder.unit(doMgdl));
}
}
// If we are using the plugin as the primary then show xdrip original as well
if (Pref.getBooleanDefaultFalse("display_glucose_from_plugin") || Pref.getBooleanDefaultFalse("use_pluggable_alg_as_primary")) {
// make sure do this only once
final CalibrationAbstract plugin_xdrip = getCalibrationPlugin(PluggableCalibration.Type.xDripOriginal);
if (plugin_xdrip != null) {
final CalibrationAbstract.CalibrationData pcalibration = plugin_xdrip.getCalibrationData();
if (extraline.length() > 0)
// not tested on the widget yet
extraline.append("\n");
if (pcalibration != null)
extraline.append("(" + plugin_xdrip.getAlgorithmName() + ") s:" + JoH.qs(pcalibration.slope, 2) + " i:" + JoH.qs(pcalibration.intercept, 2));
BgReading bgReading = BgReading.last();
if (bgReading != null) {
final boolean doMgdl = Pref.getString("units", "mgdl").equals("mgdl");
extraline.append(" \u21D2 " + BgGraphBuilder.unitized_string(plugin_xdrip.getGlucoseFromSensorValue(bgReading.age_adjusted_raw_value), doMgdl) + " " + BgGraphBuilder.unit(doMgdl));
}
}
}
}
if (Pref.getBoolean("status_line_time", false)) {
SimpleDateFormat sdf = new SimpleDateFormat("HH:mm");
if (extraline.length() != 0)
extraline.append(' ');
extraline.append(sdf.format(new Date()));
}
return extraline.toString();
}
use of com.eveningoutpost.dexdrip.calibrations.CalibrationAbstract in project xDrip by NightscoutFoundation.
the class BestGlucose method getDisplayGlucose.
// note we don't support the original depreciated "predictive" mode
// TODO stale data
// TODO time ago
// TODO check BGgraph data is current
// TODO internalize delta handling to handle irregular periods and missing data plugins etc
// TODO see getSlopeArrowSymbolBeforeCalibration for calculation method for arbitary slope
// TODO option to process noise or not
// TODO check what happens if there is only a single entry, especially regarding delta
// TODO select by time
public static DisplayGlucose getDisplayGlucose() {
if (prefs == null)
prefs = PreferenceManager.getDefaultSharedPreferences(xdrip.getAppContext());
// return value
final DisplayGlucose dg = new DisplayGlucose();
final boolean doMgdl = (prefs.getString("units", "mgdl").equals("mgdl"));
final boolean is_follower = Home.get_follower();
dg.doMgDl = doMgdl;
List<BgReading> last_2 = BgReading.latest(2);
final BgReading lastBgReading = BgReading.last(is_follower);
if (lastBgReading == null)
return null;
final CalibrationAbstract.CalibrationData pcalibration;
final CalibrationAbstract plugin = getCalibrationPluginFromPreferences();
double estimate = -1;
double filtered = -1;
long timestamp = -1;
double previous_estimate = -1;
double previous_filtered = -1;
long previous_timestamp = -1;
// normal first
estimate = lastBgReading.calculated_value;
filtered = lastBgReading.filtered_calculated_value;
timestamp = lastBgReading.timestamp;
if (last_2.size() == 2) {
previous_estimate = last_2.get(1).calculated_value;
previous_filtered = last_2.get(1).filtered_calculated_value;
previous_timestamp = last_2.get(1).timestamp;
}
dg.mssince = JoH.msSince(lastBgReading.timestamp);
dg.timestamp = lastBgReading.timestamp;
// if we are actively using a plugin, get the glucose calculation from there
if ((plugin != null) && ((pcalibration = plugin.getCalibrationData()) != null) && (Pref.getBoolean("display_glucose_from_plugin", false))) {
dg.plugin_name = plugin.getAlgorithmName();
Log.d(TAG, "Using plugin: " + dg.plugin_name);
dg.from_plugin = true;
estimate = plugin.getGlucoseFromBgReading(lastBgReading, pcalibration);
filtered = plugin.getGlucoseFromFilteredBgReading(lastBgReading, pcalibration);
// also try to update the previous values in the same way
if (last_2.size() == 2) {
previous_estimate = plugin.getGlucoseFromBgReading(last_2.get(1), pcalibration);
previous_filtered = plugin.getGlucoseFromFilteredBgReading(last_2.get(1), pcalibration);
}
}
int warning_level = 0;
String slope_arrow = "";
String slope_name = "";
String extrastring = "";
double estimated_delta = 0;
// TODO refresh bggraph if needed based on cache - observe
// should this be conditional on whether bg_compensate_noise is set?
BgGraphBuilder.refreshNoiseIfOlderThan(dg.timestamp);
dg.noise = BgGraphBuilder.last_noise;
boolean bg_from_filtered = prefs.getBoolean("bg_from_filtered", false);
// if noise has settled down then switch off filtered mode
if ((bg_from_filtered) && (BgGraphBuilder.last_noise < BgGraphBuilder.NOISE_FORGIVE) && (prefs.getBoolean("bg_compensate_noise", false))) {
bg_from_filtered = false;
prefs.edit().putBoolean("bg_from_filtered", false).apply();
}
// TODO Noise uses plugin in bggraphbuilder
if (compensateNoise()) {
// this maybe needs scaling based on noise intensity
estimate = BgGraphBuilder.best_bg_estimate;
estimated_delta = BgGraphBuilder.best_bg_estimate - BgGraphBuilder.last_bg_estimate;
// TODO handle ratio when period is not dexcom period?
double estimated_delta_by_minute = estimated_delta / (BgGraphBuilder.DEXCOM_PERIOD / 60000);
dg.slope = estimated_delta_by_minute / 60000;
dg.unitized_delta_no_units = BgGraphBuilder.unitizedDeltaStringRaw(false, true, estimated_delta, doMgdl);
// TODO optimize adding units
dg.unitized_delta = BgGraphBuilder.unitizedDeltaStringRaw(true, true, estimated_delta, doMgdl);
// delta by minute
slope_arrow = BgReading.slopeToArrowSymbol(estimated_delta_by_minute);
slope_name = BgReading.slopeName(estimated_delta_by_minute);
// warning symbol !
extrastring = "\u26A0";
warning_level = 1;
if ((BgGraphBuilder.last_noise > BgGraphBuilder.NOISE_HIGH) && (DexCollectionType.hasFiltered())) {
// force filtered mode
bg_from_filtered = true;
}
} else {
// TODO ignores plugin
// dg.unitized_delta = BgGraphBuilder.unitizedDeltaString(true, true, is_follower , doMgdl);
dg.unitized_delta_no_units = unitizedDeltaString(false, true, doMgdl, estimate, timestamp, previous_estimate, previous_timestamp);
// TODO time stretch adjustment?
estimated_delta = estimate - previous_estimate;
// TODO optimize adding units
dg.unitized_delta = unitizedDeltaString(true, true, doMgdl, estimate, timestamp, previous_estimate, previous_timestamp);
long time_delta = timestamp - previous_timestamp;
if (time_delta < 0)
Log.wtf(TAG, "Time delta is negative! : " + time_delta);
// slope_arrow = lastBgReading.slopeArrow(); // internalize this for plugins
double slope = calculateSlope(estimate, timestamp, previous_estimate, previous_timestamp);
dg.slope = slope;
// slope by minute
slope_arrow = BgReading.slopeToArrowSymbol(slope * 60000);
slope_name = BgReading.slopeName(slope * 60000);
Log.d(TAG, "No noise option slope by minute: " + JoH.qs(slope * 60000, 5));
}
// TODO bit more work on deltas etc needed here
if (bg_from_filtered) {
estimate = filtered;
warning_level = 2;
}
dg.unitized_value = BgGraphBuilder.unitized(estimate, doMgdl);
final String stringEstimate = BgGraphBuilder.unitized_string(estimate, doMgdl);
if ((lastBgReading.hide_slope) || (bg_from_filtered)) {
slope_arrow = "";
slope_name = "NOT COMPUTABLE";
}
dg.mgdl = estimate;
dg.delta_mgdl = estimated_delta;
dg.warning = warning_level;
dg.unitized = stringEstimate;
dg.delta_arrow = slope_arrow;
dg.extra_string = extrastring;
dg.delta_name = slope_name;
// to be moved one day
if (!SensorSanity.isRawValueSane(lastBgReading.raw_data)) {
dg.delta_arrow = "!";
dg.unitized = ">!?";
dg.mgdl = 0;
dg.delta_mgdl = 0;
dg.unitized_value = 0;
dg.unitized_delta = "";
dg.slope = 0;
if (JoH.ratelimit("exceeding_max_raw", 120)) {
UserError.Log.wtf(TAG, "Failing raw bounds validation: " + lastBgReading.raw_data);
}
}
if (d)
Log.d(TAG, "dg result: " + dg.unitized + " previous: " + BgGraphBuilder.unitized_string(previous_estimate, doMgdl));
return dg;
}
use of com.eveningoutpost.dexdrip.calibrations.CalibrationAbstract in project xDrip by NightscoutFoundation.
the class CalibrationGraph method setupCharts.
public void setupCharts() {
chart = (LineChartView) findViewById(R.id.chart);
List<Line> lines = new ArrayList<Line>();
// calibration values
List<Calibration> calibrations = Calibration.allForSensor();
List<Line> greyLines = getCalibrationsLine(calibrations, Color.parseColor("#66FFFFFF"));
calibrations = Calibration.allForSensorInLastFourDays();
List<Line> blueLines = getCalibrationsLine(calibrations, ChartUtils.COLOR_BLUE);
Calibration calibration = Calibration.lastValid();
if (calibration != null) {
// set header
DecimalFormat df = new DecimalFormat("#");
df.setMaximumFractionDigits(2);
df.setMinimumFractionDigits(2);
String Header = "slope = " + df.format(calibration.slope) + " intercept = " + df.format(calibration.intercept);
GraphHeader.setText(Header);
// red line
List<PointValue> lineValues = new ArrayList<PointValue>();
final float conversion_factor = (float) (doMgdl ? 1 : Constants.MGDL_TO_MMOLL);
lineValues.add(new PointValue((float) start_x, (conversion_factor * (float) (start_x * calibration.slope + calibration.intercept))));
lineValues.add(new PointValue((float) end_x, (conversion_factor * (float) (end_x * calibration.slope + calibration.intercept))));
Line calibrationLine = new Line(lineValues);
calibrationLine.setColor(ChartUtils.COLOR_RED);
calibrationLine.setHasLines(true);
calibrationLine.setHasPoints(false);
lines.add(calibrationLine);
// calibration plugin
final CalibrationAbstract plugin = getCalibrationPluginFromPreferences();
if (plugin != null) {
final CalibrationAbstract.CalibrationData pcalibration = plugin.getCalibrationData();
final List<PointValue> plineValues = new ArrayList<PointValue>();
plineValues.add(new PointValue((float) start_x, (conversion_factor * (float) (plugin.getGlucoseFromSensorValue(start_x, pcalibration)))));
plineValues.add(new PointValue((float) end_x, (conversion_factor * (float) (plugin.getGlucoseFromSensorValue(end_x, pcalibration)))));
final Line pcalibrationLine = new Line(plineValues);
pcalibrationLine.setColor(Color.parseColor(plugin_color));
pcalibrationLine.setHasLines(true);
pcalibrationLine.setHasPoints(false);
lines.add(pcalibrationLine);
PluginHeader.setText("(" + plugin.getAlgorithmName() + ") " + "s = " + df.format(pcalibration.slope) + " i = " + df.format(pcalibration.intercept));
PluginHeader.setTextColor(Color.parseColor(plugin_color));
}
// add lines in order
for (Line greyLine : greyLines) {
lines.add(greyLine);
}
for (Line blueLine : blueLines) {
lines.add(blueLine);
}
}
Axis axisX = new Axis();
Axis axisY = new Axis().setHasLines(true);
axisX.setName("Raw Value");
axisY.setName("Glucose " + (doMgdl ? "mg/dl" : "mmol/l"));
data = new LineChartData(lines);
data.setAxisXBottom(axisX);
data.setAxisYLeft(axisY);
chart.setLineChartData(data);
}
use of com.eveningoutpost.dexdrip.calibrations.CalibrationAbstract in project xDrip by NightscoutFoundation.
the class BloodTest method opportunisticCalibration.
static synchronized void opportunisticCalibration() {
if (Pref.getBooleanDefaultFalse("bluetooth_meter_for_calibrations_auto")) {
final BloodTest bt = lastValid();
if (bt == null) {
Log.d(TAG, "opportunistic: No blood tests");
return;
}
if (JoH.msSince(bt.timestamp) > Constants.DAY_IN_MS) {
Log.d(TAG, "opportunistic: Blood test older than 1 days ago");
return;
}
if ((bt.uuid == null) || (bt.uuid.length() < 8)) {
Log.d(TAG, "opportunisitic: invalid uuid");
return;
}
if ((bt.uuid != null) && (bt.uuid.length() > 1) && PersistentStore.getString(LAST_BT_AUTO_CALIB_UUID).equals(bt.uuid)) {
Log.d(TAG, "opportunistic: Already processed uuid: " + bt.uuid);
return;
}
final Calibration calibration = Calibration.lastValid();
if (calibration == null) {
Log.d(TAG, "opportunistic: No calibrations");
return;
}
if (JoH.msSince(calibration.timestamp) < Constants.HOUR_IN_MS) {
Log.d(TAG, "opportunistic: Last calibration less than 1 hour ago");
return;
}
if (bt.timestamp <= calibration.timestamp) {
Log.d(TAG, "opportunistic: Blood test isn't more recent than last calibration");
return;
}
// get closest bgreading - must be within dexcom period and locked to sensor
final BgReading bgReading = BgReading.getForPreciseTimestamp(bt.timestamp + (AddCalibration.estimatedInterstitialLagSeconds * 1000), BgGraphBuilder.DEXCOM_PERIOD);
if (bgReading == null) {
Log.d(TAG, "opportunistic: No matching bg reading");
return;
}
if (bt.timestamp > highest_timestamp) {
Accuracy.create(bt, bgReading, "xDrip Original");
final CalibrationAbstract plugin = PluggableCalibration.getCalibrationPluginFromPreferences();
final CalibrationAbstract.CalibrationData cd = (plugin != null) ? plugin.getCalibrationData(bgReading.timestamp) : null;
if (plugin != null) {
BgReading pluginBgReading = plugin.getBgReadingFromBgReading(bgReading, cd);
Accuracy.create(bt, pluginBgReading, plugin.getAlgorithmName());
}
highest_timestamp = bt.timestamp;
}
if (!CalibrationRequest.isSlopeFlatEnough(bgReading)) {
Log.d(TAG, "opportunistic: Slope is not flat enough at: " + JoH.dateTimeText(bgReading.timestamp));
return;
}
// TODO store evaluation failure for this record in cache for future optimization
// TODO Check we have prior reading as well perhaps
UserError.Log.ueh(TAG, "Opportunistic calibration for Blood Test at " + JoH.dateTimeText(bt.timestamp) + " of " + BgGraphBuilder.unitized_string_with_units_static(bt.mgdl) + " matching sensor slope at: " + JoH.dateTimeText(bgReading.timestamp));
final long time_since = JoH.msSince(bt.timestamp);
Log.d(TAG, "opportunistic: attempting auto calibration");
PersistentStore.setString(LAST_BT_AUTO_CALIB_UUID, bt.uuid);
Home.startHomeWithExtra(xdrip.getAppContext(), Home.BLUETOOTH_METER_CALIBRATION, BgGraphBuilder.unitized_string_static(bt.mgdl), Long.toString(time_since), "auto");
}
}
use of com.eveningoutpost.dexdrip.calibrations.CalibrationAbstract in project xDrip-plus by jamorham.
the class BloodTest method opportunisticCalibration.
static synchronized void opportunisticCalibration() {
if (Pref.getBooleanDefaultFalse("bluetooth_meter_for_calibrations_auto")) {
final BloodTest bt = lastValid();
if (bt == null) {
Log.d(TAG, "opportunistic: No blood tests");
return;
}
if (JoH.msSince(bt.timestamp) > Constants.DAY_IN_MS) {
Log.d(TAG, "opportunistic: Blood test older than 1 days ago");
return;
}
if ((bt.uuid == null) || (bt.uuid.length() < 8)) {
Log.d(TAG, "opportunisitic: invalid uuid");
return;
}
if ((bt.uuid != null) && (bt.uuid.length() > 1) && PersistentStore.getString(LAST_BT_AUTO_CALIB_UUID).equals(bt.uuid)) {
Log.d(TAG, "opportunistic: Already processed uuid: " + bt.uuid);
return;
}
final Calibration calibration = Calibration.lastValid();
if (calibration == null) {
Log.d(TAG, "opportunistic: No calibrations");
return;
}
if (JoH.msSince(calibration.timestamp) < Constants.HOUR_IN_MS) {
Log.d(TAG, "opportunistic: Last calibration less than 1 hour ago");
return;
}
if (bt.timestamp <= calibration.timestamp) {
Log.d(TAG, "opportunistic: Blood test isn't more recent than last calibration");
return;
}
// get closest bgreading - must be within dexcom period and locked to sensor
final BgReading bgReading = BgReading.getForPreciseTimestamp(bt.timestamp + (AddCalibration.estimatedInterstitialLagSeconds * 1000), BgGraphBuilder.DEXCOM_PERIOD);
if (bgReading == null) {
Log.d(TAG, "opportunistic: No matching bg reading");
return;
}
if (bt.timestamp > highest_timestamp) {
Accuracy.create(bt, bgReading, "xDrip Original");
final CalibrationAbstract plugin = PluggableCalibration.getCalibrationPluginFromPreferences();
final CalibrationAbstract.CalibrationData cd = (plugin != null) ? plugin.getCalibrationData(bgReading.timestamp) : null;
if (plugin != null) {
BgReading pluginBgReading = plugin.getBgReadingFromBgReading(bgReading, cd);
Accuracy.create(bt, pluginBgReading, plugin.getAlgorithmName());
}
highest_timestamp = bt.timestamp;
}
if (!CalibrationRequest.isSlopeFlatEnough(bgReading)) {
Log.d(TAG, "opportunistic: Slope is not flat enough at: " + JoH.dateTimeText(bgReading.timestamp));
return;
}
// TODO store evaluation failure for this record in cache for future optimization
// TODO Check we have prior reading as well perhaps
UserError.Log.ueh(TAG, "Opportunistic calibration for Blood Test at " + JoH.dateTimeText(bt.timestamp) + " of " + BgGraphBuilder.unitized_string_with_units_static(bt.mgdl) + " matching sensor slope at: " + JoH.dateTimeText(bgReading.timestamp));
final long time_since = JoH.msSince(bt.timestamp);
Log.d(TAG, "opportunistic: attempting auto calibration");
PersistentStore.setString(LAST_BT_AUTO_CALIB_UUID, bt.uuid);
Home.startHomeWithExtra(xdrip.getAppContext(), Home.BLUETOOTH_METER_CALIBRATION, BgGraphBuilder.unitized_string_static(bt.mgdl), Long.toString(time_since), "auto");
}
}
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