Examples with CsvReadException com.fasterxml.jackson.dataformat.csv.CsvReadException used on opensource projects

Example 1 with CsvReadException

use of com.fasterxml.jackson.dataformat.csv.CsvReadException in project tracdap by finos.

the class CsvDecoder method decodeChunk.

@Override
protected void decodeChunk(ByteBuf chunk) {
    var csvFactory = new CsvFactory().enable(CsvParser.Feature.TRIM_SPACES).enable(CsvParser.Feature.FAIL_ON_MISSING_COLUMNS);
    try (var stream = new ByteBufInputStream(chunk);
        var parser = (CsvParser) csvFactory.createParser((InputStream) stream)) {
        var csvSchema = CsvSchemaMapping.arrowToCsv(this.arrowSchema).build();
        csvSchema = DEFAULT_HEADER_FLAG ? csvSchema.withHeader() : csvSchema.withoutHeader();
        parser.setSchema(csvSchema);
        var row = 0;
        var col = 0;
        JsonToken token;
        while ((token = parser.nextToken()) != null) {
            switch(token) {
                // For CSV files, a null field name is produced for every field
                case FIELD_NAME:
                    continue;
                case VALUE_NULL:
                case VALUE_TRUE:
                case VALUE_FALSE:
                case VALUE_STRING:
                case VALUE_NUMBER_INT:
                case VALUE_NUMBER_FLOAT:
                    var vector = root.getVector(col);
                    JacksonValues.parseAndSet(vector, row, parser, token);
                    col++;
                    break;
                case START_OBJECT:
                    if (row == 0)
                        for (var vector_ : root.getFieldVectors()) vector_.allocateNew();
                    break;
                case END_OBJECT:
                    row++;
                    col = 0;
                    if (row == BATCH_SIZE) {
                        root.setRowCount(row);
                        dispatchBatch(root);
                        row = 0;
                    }
                    break;
                default:
                    var msg = String.format("Unexpected token %s", token.name());
                    throw new CsvReadException(parser, msg, csvSchema);
            }
        }
        if (row > 0 || col > 0) {
            root.setRowCount(row);
            dispatchBatch(root);
        }
    } catch (JacksonException e) {
        // This exception is a "well-behaved" parse failure, parse location and message should be meaningful
        var errorMessage = String.format("CSV decoding failed on line %d: %s", e.getLocation().getLineNr(), e.getOriginalMessage());
        log.error(errorMessage, e);
        throw new EDataCorruption(errorMessage, e);
    } catch (IOException e) {
        // Decoders work on a stream of buffers, "real" IO exceptions should not occur
        // IO exceptions here indicate parse failures, not file/socket communication errors
        // This is likely to be a more "badly-behaved" failure, or at least one that was not anticipated
        var errorMessage = "CSV decoding failed, content is garbled: " + e.getMessage();
        log.error(errorMessage, e);
        throw new EDataCorruption(errorMessage, e);
    } catch (Throwable e) {
        // Ensure unexpected errors are still reported to the Flow API
        log.error("Unexpected error in CSV decoding", e);
        throw new EUnexpected(e);
    } finally {
        chunk.release();
    }
}

Example 2 with CsvReadException

use of com.fasterxml.jackson.dataformat.csv.CsvReadException in project tracdap by finos.

the class CsvDecoder method decodeChunk.

@Override
protected void decodeChunk(ByteBuf chunk) {
    var csvFactory = new CsvFactory().enable(CsvParser.Feature.FAIL_ON_MISSING_COLUMNS).enable(CsvParser.Feature.EMPTY_STRING_AS_NULL).enable(CsvParser.Feature.TRIM_SPACES);
    try (var stream = new ByteBufInputStream(chunk);
        var parser = (CsvParser) csvFactory.createParser((InputStream) stream)) {
        var csvSchema = CsvSchemaMapping.arrowToCsv(this.arrowSchema).build();
        csvSchema = DEFAULT_HEADER_FLAG ? csvSchema.withHeader() : csvSchema.withoutHeader();
        parser.setSchema(csvSchema);
        var row = 0;
        var col = 0;
        JsonToken token;
        while ((token = parser.nextToken()) != null) {
            switch(token) {
                // For CSV files, a null field name is produced for every field
                case FIELD_NAME:
                    continue;
                case VALUE_NULL:
                    // Special handling to differentiate between null and empty strings
                    var nullVector = root.getVector(col);
                    var minorType = nullVector.getMinorType();
                    if (minorType == Types.MinorType.VARCHAR) {
                        // Null strings are encoded with no space between commas (or EOL): some_value,,next_value
                        // An empty string is encoded as "", i.e. token width = 2 (or more with padding)
                        // Using token end - token start, a gap between commas -> empty string instead of null
                        // It would be nicer to check the original bytes to see if there are quote chars in there
                        // But this is not possible with the current Jackson API
                        var tokenStart = parser.currentTokenLocation();
                        var tokenEnd = parser.currentLocation();
                        var tokenWidth = tokenEnd.getColumnNr() - tokenStart.getColumnNr();
                        if (tokenWidth > 1) {
                            JacksonValues.setEmptyString(nullVector, row);
                            col++;
                            continue;
                        }
                    }
                case VALUE_TRUE:
                case VALUE_FALSE:
                case VALUE_STRING:
                case VALUE_NUMBER_INT:
                case VALUE_NUMBER_FLOAT:
                    var vector = root.getVector(col);
                    JacksonValues.parseAndSet(vector, row, parser, token);
                    col++;
                    break;
                case START_OBJECT:
                    if (row == 0)
                        for (var vector_ : root.getFieldVectors()) vector_.allocateNew();
                    break;
                case END_OBJECT:
                    row++;
                    col = 0;
                    if (row == BATCH_SIZE) {
                        root.setRowCount(row);
                        dispatchBatch(root);
                        row = 0;
                    }
                    break;
                default:
                    var msg = String.format("Unexpected token %s", token.name());
                    throw new CsvReadException(parser, msg, csvSchema);
            }
        }
        if (row > 0 || col > 0) {
            root.setRowCount(row);
            dispatchBatch(root);
        }
    } catch (JacksonException e) {
        // This exception is a "well-behaved" parse failure, parse location and message should be meaningful
        var errorMessage = String.format("CSV decoding failed on line %d: %s", e.getLocation().getLineNr(), e.getOriginalMessage());
        log.error(errorMessage, e);
        throw new EDataCorruption(errorMessage, e);
    } catch (IOException e) {
        // Decoders work on a stream of buffers, "real" IO exceptions should not occur
        // IO exceptions here indicate parse failures, not file/socket communication errors
        // This is likely to be a more "badly-behaved" failure, or at least one that was not anticipated
        var errorMessage = "CSV decoding failed, content is garbled: " + e.getMessage();
        log.error(errorMessage, e);
        throw new EDataCorruption(errorMessage, e);
    } catch (Throwable e) {
        // Ensure unexpected errors are still reported to the Flow API
        log.error("Unexpected error in CSV decoding", e);
        throw new EUnexpected(e);
    } finally {
        chunk.release();
    }
}