Examples with VcfBurdenFilterExac com.github.lindenb.jvarkit.tools.burden.VcfBurdenFilterExac used on opensource projects

Example 1 with VcfBurdenFilterExac

use of com.github.lindenb.jvarkit.tools.burden.VcfBurdenFilterExac in project jvarkit by lindenb.

the class TestNg01 method testVcfBurdenFilterExac.

@Test(groups = { "burden" }, dependsOnMethods = { "testVcfMultiToOneAllele" })
public void testVcfBurdenFilterExac() throws IOException {
    final File input = new File(TEST_RESULTS_DIR, "tmp.multi2oneallele.vcf");
    Assert.assertEquals(0, new VcfBurdenFilterExac().instanceMain(new String[] { "-o", JETER_VCF.getPath(), "--discardNotInExac", "--exac", "src/test/resources/ExAC.r1.sites.vep.vcf.gz", input.getPath() }));
    assertIsVcf(JETER_VCF);
    Assert.assertTrue(JETER_VCF.exists());
}