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Example 1 with VcfBurdenMAF

use of com.github.lindenb.jvarkit.tools.burden.VcfBurdenMAF in project jvarkit by lindenb.

the class TestNg01 method testVcfBurdenMAF.

@Test(groups = { "burden" }, dependsOnMethods = { "testVcfMultiToOneAllele" })
public void testVcfBurdenMAF() throws IOException {
    final File input = new File(TEST_RESULTS_DIR, "tmp.multi2oneallele.vcf");
    Assert.assertEquals(0, new VcfBurdenMAF().instanceMain(new String[] { "-o", JETER_VCF.getPath(), input.getPath() }));
    assertIsVcf(JETER_VCF);
    Assert.assertTrue(JETER_VCF.delete());
}
Also used : VcfBurdenMAF(com.github.lindenb.jvarkit.tools.burden.VcfBurdenMAF) File(java.io.File) Test(org.testng.annotations.Test)

Aggregations

VcfBurdenMAF (com.github.lindenb.jvarkit.tools.burden.VcfBurdenMAF)1 File (java.io.File)1 Test (org.testng.annotations.Test)1