Examples with VcfFilterNotInPedigree com.github.lindenb.jvarkit.tools.burden.VcfFilterNotInPedigree used on opensource projects

Example 1 with VcfFilterNotInPedigree

use of com.github.lindenb.jvarkit.tools.burden.VcfFilterNotInPedigree in project jvarkit by lindenb.

the class TestNg01 method testVcfFilterNotInPedigree.

@Test(groups = { "burden" }, dependsOnMethods = { "testVcfInjectPed" })
public void testVcfFilterNotInPedigree() throws IOException {
    final File input = new File(TEST_RESULTS_DIR, "tmp.ped.vcf");
    Assert.assertEquals(0, new VcfFilterNotInPedigree().instanceMain(new String[] { "-o", JETER_VCF.getPath(), input.getPath() }));
    assertIsVcf(JETER_VCF);
    Assert.assertTrue(JETER_VCF.exists());
}