Examples with MiniCaller com.github.lindenb.jvarkit.tools.calling.MiniCaller used on opensource projects

Example 1 with MiniCaller

use of com.github.lindenb.jvarkit.tools.calling.MiniCaller in project jvarkit by lindenb.

the class TestNg01 method testMiniCaller.

@Test
public void testMiniCaller() throws IOException {
    final File output = new File(TEST_RESULTS_DIR, "jeter.vcf");
    Assert.assertEquals(0, new MiniCaller().instanceMain(new String[] { "-o", output.getPath(), "-R", TOY_FA, TOY_BAM }));
    assertIsVcf(output);
    Assert.assertTrue(output.delete());
}