use of com.github.lindenb.jvarkit.tools.calling.MiniCaller in project jvarkit by lindenb.
the class TestNg01 method testMiniCaller.
@Test
public void testMiniCaller() throws IOException {
final File output = new File(TEST_RESULTS_DIR, "jeter.vcf");
Assert.assertEquals(0, new MiniCaller().instanceMain(new String[] { "-o", output.getPath(), "-R", TOY_FA, TOY_BAM }));
assertIsVcf(output);
Assert.assertTrue(output.delete());
}
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