Examples with FastqShuffle com.github.lindenb.jvarkit.tools.fastq.FastqShuffle used on opensource projects

Example 1 with FastqShuffle

use of com.github.lindenb.jvarkit.tools.fastq.FastqShuffle in project jvarkit by lindenb.

the class TestNg01 method testFastqShuffle.

@Test
public void testFastqShuffle() throws IOException {
    final File output = new File(TEST_RESULTS_DIR, "jeter.fq.gz");
    Assert.assertEquals(0, new FastqShuffle().instanceMain(new String[] { "-o", output.getPath(), "./src/test/resources/SAMPLE1_GATGAATC_L002_R1_001.fastq.gz", "./src/test/resources/SAMPLE1_GATGAATC_L002_R2_001.fastq.gz" }));
    Assert.assertTrue(output.delete());
}