Examples with FixVcfMissingGenotypes com.github.lindenb.jvarkit.tools.misc.FixVcfMissingGenotypes used on opensource projects

Example 1 with FixVcfMissingGenotypes

use of com.github.lindenb.jvarkit.tools.misc.FixVcfMissingGenotypes in project jvarkit by lindenb.

the class TestNg01 method testFixVcfMissingGenotypes.

@Test
public void testFixVcfMissingGenotypes() throws IOException {
    final File output = new File(TEST_RESULTS_DIR, "jeter.vcf");
    Assert.assertEquals(0, new FixVcfMissingGenotypes().instanceMain(new String[] { "-B", TOY_BAM, "-o", output.getPath(), TOY_VCF_GZ }));
    Assert.assertTrue(output.delete());
}