Examples with Gff2KnownGene com.github.lindenb.jvarkit.tools.misc.Gff2KnownGene used on opensource projects

Example 1 with Gff2KnownGene

use of com.github.lindenb.jvarkit.tools.misc.Gff2KnownGene in project jvarkit by lindenb.

the class TestNg01 method testGff2kg.

@Test
public void testGff2kg() throws IOException {
    final File output = new File(TEST_RESULTS_DIR, "jeter.kg");
    Assert.assertEquals(0, new Gff2KnownGene().instanceMain(new String[] { "-o", output.getPath(), "src/test/resources/gencode.v19.annotation.gff3" }));
    Assert.assertTrue(output.delete());
}