Examples with SmooveGenesParser com.github.lindenb.jvarkit.util.vcf.predictions.SmooveGenesParser used on opensource projects

Example 1 with SmooveGenesParser

use of com.github.lindenb.jvarkit.util.vcf.predictions.SmooveGenesParser in project jvarkit by lindenb.

the class VcfTools method init.

public void init(final VCFHeader header) {
    this.header = header;
    this.snpEffPredictionParser = new SnpEffPredictionParserFactory().header(header).get();
    this.vepPredictionParser = new VepPredictionParserFactory().header(header).get();
    this.annPredictionParser = new AnnPredictionParserFactory(header).get();
    this.bcftoolsCsqPredictionParser = new BcfToolsPredictionParserFactory(header).get();
    this.lofSnpeffParser = SnpEffLofNmdParser.createLofParser(header);
    this.nmdSnpeffParser = SnpEffLofNmdParser.createNmdParser(header);
    this.smooveGenesParser = new SmooveGenesParser(header);
}