Examples with Dataset com.google.api.services.healthcare.v1.model.Dataset used on opensource projects

Example 46 with Dataset

use of com.google.api.services.healthcare.v1.model.Dataset in project java-docs-samples by GoogleCloudPlatform.

the class FhirStoreImport method fhirStoreImport.

public static void fhirStoreImport(String fhirStoreName, String gcsUri) throws IOException {
    // String fhirStoreName =
    // String.format(
    // FHIR_NAME, "your-project-id", "your-region-id", "your-dataset-id", "your-fhir-id");
    // String gcsUri = "gs://your-bucket-id/path/to/destination/dir"
    // Initialize the client, which will be used to interact with the service.
    CloudHealthcare client = createClient();
    // Configure where the store should be imported from.
    GoogleCloudHealthcareV1FhirGcsSource gcsSource = new GoogleCloudHealthcareV1FhirGcsSource().setUri(gcsUri);
    ImportResourcesRequest importRequest = new ImportResourcesRequest().setGcsSource(gcsSource);
    // Create request and configure any parameters.
    FhirStores.CloudHealthcareImport request = client.projects().locations().datasets().fhirStores().healthcareImport(fhirStoreName, importRequest);
    // Execute the request, wait for the operation to complete, and process the results.
    try {
        Operation operation = request.execute();
        while (operation.getDone() == null || !operation.getDone()) {
            // Update the status of the operation with another request.
            // Pause for 500ms between requests.
            Thread.sleep(500);
            operation = client.projects().locations().datasets().operations().get(operation.getName()).execute();
        }
        System.out.println("FHIR store import complete: " + operation.getResponse());
    } catch (Exception ex) {
        System.out.printf("Error during request execution: %s", ex.toString());
        ex.printStackTrace(System.out);
    }
}

Example 47 with Dataset

use of com.google.api.services.healthcare.v1.model.Dataset in project java-docs-samples by GoogleCloudPlatform.

the class FhirResourceCreate method fhirResourceCreate.

public static void fhirResourceCreate(String fhirStoreName, String resourceType) throws IOException, URISyntaxException {
    // String fhirStoreName =
    // String.format(
    // FHIR_NAME, "your-project-id", "your-region-id", "your-dataset-id", "your-fhir-id");
    // String resourceType = "Patient";
    // Initialize the client, which will be used to interact with the service.
    CloudHealthcare client = createClient();
    HttpClient httpClient = HttpClients.createDefault();
    String uri = String.format("%sv1/%s/fhir/%s", client.getRootUrl(), fhirStoreName, resourceType);
    URIBuilder uriBuilder = new URIBuilder(uri).setParameter("access_token", getAccessToken());
    StringEntity requestEntity = new StringEntity("{\"resourceType\": \"" + resourceType + "\", \"language\": \"en\"}");
    HttpUriRequest request = RequestBuilder.post().setUri(uriBuilder.build()).setEntity(requestEntity).addHeader("Content-Type", "application/fhir+json").addHeader("Accept-Charset", "utf-8").addHeader("Accept", "application/fhir+json; charset=utf-8").build();
    // Execute the request and process the results.
    HttpResponse response = httpClient.execute(request);
    HttpEntity responseEntity = response.getEntity();
    if (response.getStatusLine().getStatusCode() != HttpStatus.SC_CREATED) {
        System.err.print(String.format("Exception creating FHIR resource: %s\n", response.getStatusLine().toString()));
        responseEntity.writeTo(System.err);
        throw new RuntimeException();
    }
    System.out.print("FHIR resource created: ");
    responseEntity.writeTo(System.out);
}

Example 48 with Dataset

use of com.google.api.services.healthcare.v1.model.Dataset in project java-docs-samples by GoogleCloudPlatform.

the class FhirResourceDeletePurge method fhirResourceDeletePurge.

public static void fhirResourceDeletePurge(String resourceName) throws IOException, URISyntaxException {
    // String resourceName =
    // String.format(
    // FHIR_NAME, "project-id", "region-id", "dataset-id", "store-id", "resource-type",
    // "resource-id");
    // Initialize the client, which will be used to interact with the service.
    CloudHealthcare client = createClient();
    HttpClient httpClient = HttpClients.createDefault();
    String uri = String.format("%sv1/%s/$purge", client.getRootUrl(), resourceName);
    URIBuilder uriBuilder = new URIBuilder(uri).setParameter("access_token", getAccessToken());
    HttpUriRequest request = RequestBuilder.delete().setUri(uriBuilder.build()).addHeader("Content-Type", "application/fhir+json").addHeader("Accept-Charset", "utf-8").addHeader("Accept", "application/fhir+json; charset=utf-8").build();
    // Execute the request and process the results.
    HttpResponse response = httpClient.execute(request);
    HttpEntity responseEntity = response.getEntity();
    if (response.getStatusLine().getStatusCode() != HttpStatus.SC_OK) {
        String errorMessage = String.format("Exception purging FHIR resource: %s\n", response.getStatusLine().toString());
        System.err.print(errorMessage);
        responseEntity.writeTo(System.err);
        throw new RuntimeException(errorMessage);
    }
    System.out.println("FHIR resource history purged (excluding current version).");
    responseEntity.writeTo(System.out);
}

Example 49 with Dataset

use of com.google.api.services.healthcare.v1.model.Dataset in project java-docs-samples by GoogleCloudPlatform.

the class FhirResourceGetHistory method fhirResourceGetHistory.

public static void fhirResourceGetHistory(String resourceName, String versionId) throws IOException, URISyntaxException {
    // String resourceName =
    // String.format(
    // FHIR_NAME, "project-id", "region-id", "dataset-id", "store-id", "resource-type",
    // "resource-id");
    // String versionId = "version-uuid"
    // Initialize the client, which will be used to interact with the service.
    CloudHealthcare client = createClient();
    HttpClient httpClient = HttpClients.createDefault();
    String uri = String.format("%sv1/%s/_history/%s", client.getRootUrl(), resourceName, versionId);
    URIBuilder uriBuilder = new URIBuilder(uri).setParameter("access_token", getAccessToken());
    HttpUriRequest request = RequestBuilder.get().setUri(uriBuilder.build()).addHeader("Content-Type", "application/fhir+json").addHeader("Accept-Charset", "utf-8").addHeader("Accept", "application/fhir+json; charset=utf-8").build();
    // Execute the request and process the results.
    HttpResponse response = httpClient.execute(request);
    HttpEntity responseEntity = response.getEntity();
    if (response.getStatusLine().getStatusCode() != HttpStatus.SC_OK) {
        System.err.print(String.format("Exception retrieving FHIR history: %s\n", response.getStatusLine().toString()));
        responseEntity.writeTo(System.err);
        throw new RuntimeException();
    }
    System.out.println("FHIR resource retrieved from version: ");
    responseEntity.writeTo(System.out);
}

Example 50 with Dataset

use of com.google.api.services.healthcare.v1.model.Dataset in project java-docs-samples by GoogleCloudPlatform.

the class FhirResourceGetPatientEverything method fhirResourceGetPatientEverything.

public static void fhirResourceGetPatientEverything(String resourceName) throws IOException, URISyntaxException {
    // String resourceName =
    // String.format(
    // FHIR_NAME, "project-id", "region-id", "dataset-id", "store-id", "patient-id");
    // Initialize the client, which will be used to interact with the service.
    CloudHealthcare client = createClient();
    HttpClient httpClient = HttpClients.createDefault();
    String uri = String.format("%sv1/%s/$everything", client.getRootUrl(), resourceName);
    URIBuilder uriBuilder = new URIBuilder(uri).setParameter("access_token", getAccessToken());
    HttpUriRequest request = RequestBuilder.get(uriBuilder.build()).addHeader("Content-Type", "application/json-patch+json").addHeader("Accept-Charset", "utf-8").addHeader("Accept", "application/fhir+json; charset=utf-8").build();
    // Execute the request and process the results.
    HttpResponse response = httpClient.execute(request);
    HttpEntity responseEntity = response.getEntity();
    if (response.getStatusLine().getStatusCode() != HttpStatus.SC_OK) {
        System.err.print(String.format("Exception getting patient everythingresource: %s\n", response.getStatusLine().toString()));
        responseEntity.writeTo(System.err);
        throw new RuntimeException();
    }
    System.out.println("Patient compartment results: ");
    responseEntity.writeTo(System.out);
}