Examples with RunApi com.hartwig.api.RunApi used on opensource projects

Example 1 with RunApi

use of com.hartwig.api.RunApi in project pipeline5 by hartwigmedical.

the class ResearchMetadataApiTest method setUp.

@Before
public void setUp() throws Exception {
    sampleApi = mock(SampleApi.class);
    setApi = mock(SetApi.class);
    bucket = mock(Bucket.class);
    when(bucket.getName()).thenReturn("bucket");
    runApi = mock(RunApi.class);
    run = new Run().id(RUN_ID);
    publisher = mock(Publisher.class);
    ObjectMapper objectMapper = ObjectMappers.get();
    setResolver = mock(SetResolver.class);
    victim = new ResearchMetadataApi(sampleApi, setApi, runApi, Optional.of(run), BIOPSY, Arguments.testDefaults(), new StagedOutputPublisher(setResolver, bucket, publisher, objectMapper, Optional.of(run), Context.RESEARCH, false, true), new Anonymizer(Arguments.testDefaults()));
}