Examples with ChromosomeFilter com.hartwig.hmftools.common.variant.filter.ChromosomeFilter used on opensource projects

Example 1 with ChromosomeFilter

use of com.hartwig.hmftools.common.variant.filter.ChromosomeFilter in project hmftools by hartwigmedical.

the class SomaticVariantFactory method filteredInstance.

@NotNull
public static SomaticVariantFactory filteredInstance(@NotNull VariantContextFilter... filters) {
    final CompoundFilter filter = new CompoundFilter(true);
    filter.add(new ChromosomeFilter());
    filter.addAll(Arrays.asList(filters));
    return new SomaticVariantFactory(filter);
}

Example 2 with ChromosomeFilter

use of com.hartwig.hmftools.common.variant.filter.ChromosomeFilter in project hmftools by hartwigmedical.

the class SomaticVariantFactory method passOnlyInstance.

@NotNull
public static SomaticVariantFactory passOnlyInstance() {
    final CompoundFilter filter = new CompoundFilter(true);
    filter.add(new ChromosomeFilter());
    filter.add(new PassingVariantFilter());
    return new SomaticVariantFactory(filter);
}