Examples with StartingPoints com.hartwig.pipeline.reruns.StartingPoint.StartingPoints used on opensource projects

Example 1 with StartingPoints

use of com.hartwig.pipeline.reruns.StartingPoint.StartingPoints in project pipeline5 by hartwigmedical.

the class StartingPointTest method startingPointsAreUpToDate.

@Test
public void startingPointsAreUpToDate() {
    List<Namespace> endStages = namespacesOf(Sigs.class, Orange.class, Cram2Bam.class, HealthChecker.class, Protect.class, Lilac.class, Cuppa.class, Peach.class);
    NamespacesTest.allNamespaces().stream().filter(n -> !endStages.contains(n)).map(Namespace::value).collect(toList()).forEach(n -> {
        boolean referenced = false;
        for (StartingPoints points : StartingPoints.values()) {
            if (new StartingPoint(testArgumentsWithStartingPoint(points.name())).usePersisted(n)) {
                referenced = true;
            }
        }
        assertThat(referenced).as("Namespace %s is referenced from at least one starting point", n).isTrue();
    });
}