Examples with CqlLibrary com.ibm.cohort.cql.library.CqlLibrary used on opensource projects

Example 1 with CqlLibrary

use of com.ibm.cohort.cql.library.CqlLibrary in project quality-measure-and-cohort-service by Alvearie.

the class TranslationCLI method runWithArgs.

public void runWithArgs(TranslationOptions options, PrintStream out) throws Exception {
    CqlLibraryProvider libraryProvider;
    if (options.directory != null && options.directory.exists()) {
        MapCqlLibraryProviderFactory libraryProviderFactory = new MapCqlLibraryProviderFactory();
        libraryProvider = libraryProviderFactory.fromDirectory(options.directory.toPath());
    } else {
        libraryProvider = new MapCqlLibraryProvider(Collections.emptyMap());
    }
    CqlLibraryProvider fhirClasspathProvider = new ClasspathCqlLibraryProvider();
    libraryProvider = new PriorityCqlLibraryProvider(libraryProvider, fhirClasspathProvider);
    CqlToElmTranslator translator = new CqlToElmTranslator();
    if (options.modelInfoFile != null && options.modelInfoFile.exists()) {
        translator.registerModelInfo(options.modelInfoFile);
    }
    String content;
    try (InputStream is = new FileInputStream(options.cqlPath)) {
        content = IOUtils.toString(is, StandardCharsets.UTF_8);
    }
    // The values in the descriptor are not relevant for the translation CLI.
    CqlLibraryDescriptor descriptor = new CqlLibraryDescriptor().setFormat(Format.CQL).setLibraryId("TranslationCLI").setVersion("TranslationCLI");
    CqlLibrary library = new CqlLibrary().setDescriptor(descriptor).setContent(content);
    CqlTranslationResult result = translator.translate(library, new ProviderBasedCqlLibrarySourceProvider(libraryProvider));
    out.println("Translated Library: ");
    out.println(result.getMainLibrary().getContent());
}

Example 2 with CqlLibrary

use of com.ibm.cohort.cql.library.CqlLibrary in project quality-measure-and-cohort-service by Alvearie.

the class GraphWalkingElmVisitor method resolveLibrary.

protected Library resolveLibrary(VersionedIdentifier libraryIdentifier) {
    CqlLibraryDescriptor descriptor = new CqlLibraryDescriptor().setLibraryId(libraryIdentifier.getId()).setVersion(libraryIdentifier.getVersion()).setFormat(Format.ELM);
    CqlLibrary library = libraryProvider.getLibrary(descriptor);
    if (library == null) {
        throw new IllegalArgumentException("Missing library " + descriptor.toString());
    }
    LOG.trace(library.getContent());
    Library elmLibrary = JAXB.unmarshal(library.getContentAsStream(), Library.class);
    return elmLibrary;
}

Example 3 with CqlLibrary

use of com.ibm.cohort.cql.library.CqlLibrary in project quality-measure-and-cohort-service by Alvearie.

the class CqlToElmTranslatorTest method testTranslationWithIncludes.

@Test
public void testTranslationWithIncludes() throws Exception {
    CqlLibraryProvider provider = new ClasspathCqlLibraryProvider("cql");
    CqlLibraryDescriptor descriptor = new CqlLibraryDescriptor().setLibraryId("SampleLibrary").setVersion("1.0.0").setFormat(Format.CQL);
    CqlLibrary primaryLibrary = provider.getLibrary(descriptor);
    CqlLibrarySourceProvider sourceProvider = vid -> {
        CqlLibraryDescriptor d = new CqlLibraryDescriptor().setLibraryId(vid.getId()).setVersion(vid.getVersion()).setFormat(Format.CQL);
        return provider.getLibrary(d).getContentAsStream();
    };
    CqlToElmTranslator translator = new CqlToElmTranslator();
    try (Reader modelInfoXML = new FileReader(new File("src/test/resources/modelinfo/mock-modelinfo-1.0.0.xml"))) {
        translator.registerModelInfo(modelInfoXML);
    }
    CqlTranslationResult result = translator.translate(primaryLibrary, sourceProvider);
    assertEquals(1, result.getDependencies().size());
}

Example 4 with CqlLibrary

use of com.ibm.cohort.cql.library.CqlLibrary in project quality-measure-and-cohort-service by Alvearie.

the class CqlTranslationIntegrationTest method runMultipleFilesTest.

private void runMultipleFilesTest(CqlLibraryProvider backingLibraryProvider) {
    Path modelInfo = Paths.get("src/test/resources/modelinfo/ig-with-target-modelinfo-0.0.1.xml");
    CqlToElmTranslator translator = new CqlToElmTranslator();
    translator.registerModelInfo(modelInfo.toFile());
    CqlLibraryProvider libraryProvider = new TranslatingCqlLibraryProvider(backingLibraryProvider, translator, true);
    List<String> libraryNames = Arrays.asList("BreastCancerScreening", "Test", "TestDateQuery");
    for (String libraryName : libraryNames) {
        CqlLibraryDescriptor descriptor = new CqlLibraryDescriptor().setLibraryId(libraryName).setVersion("1.0.0").setFormat(Format.ELM);
        CqlLibrary library = libraryProvider.getLibrary(descriptor);
        Assert.assertFalse(library.getContent().isEmpty());
    }
}

Example 5 with CqlLibrary

use of com.ibm.cohort.cql.library.CqlLibrary in project quality-measure-and-cohort-service by Alvearie.

the class TranslatingCqlLibraryProviderTest method testLoadWithTranslation.

@Test
public void testLoadWithTranslation() throws Exception {
    CqlToElmTranslator translator = new CqlToElmTranslator();
    try (Reader modelInfoXML = new FileReader("src/test/resources/modelinfo/mock-modelinfo-1.0.0.xml")) {
        translator.registerModelInfo(modelInfoXML);
    }
    CqlLibraryProvider backingProvider = new ClasspathCqlLibraryProvider("cql");
    CqlLibraryProvider provider = new TranslatingCqlLibraryProvider(backingProvider, translator);
    CqlLibraryDescriptor descriptor = new CqlLibraryDescriptor().setLibraryId("CohortHelpers").setVersion("1.0.0").setFormat(Format.CQL);
    CqlLibrary library = provider.getLibrary(descriptor);
    assertEquals(Format.CQL, library.getDescriptor().getFormat());
    assertTrue(library.getContent().startsWith("library"));
    descriptor.setFormat(Format.ELM);
    library = provider.getLibrary(descriptor);
    assertEquals(Format.ELM, library.getDescriptor().getFormat());
    assertTrue(library.getContent().startsWith("<?xml"));
}