Examples with CqlVersionedIdentifier com.ibm.cohort.cql.library.CqlVersionedIdentifier used on opensource projects

Example 21 with CqlVersionedIdentifier

use of com.ibm.cohort.cql.library.CqlVersionedIdentifier in project quality-measure-and-cohort-service by Alvearie.

the class CqlEvaluatorIntegrationTest method testIntervalStartsInterval.

@Test
public /**
 * This test exists to validate the the engine correctly evaluates CQL
 * that includes an "interval starts interval" expression. This was
 * called out because the CQL Author's Guide documentation mentioned
 * "interval begins interval" as a supported feature and "begins"
 * isn't the correct operator name.
 *
 * @throws Exception on any error.
 */
void testIntervalStartsInterval() throws Exception {
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, "1983-12-02");
    CqlEvaluator evaluator = setupTestFor(patient, "cql.temporal");
    String expression = "LHS Starts RHS";
    CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("IntervalStartsInterval", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
    Map<String, Object> expected = new HashMap<>();
    expected.put(expression, true);
    Assert.assertEquals(expected, actual.getExpressionResults());
}

Example 22 with CqlVersionedIdentifier

use of com.ibm.cohort.cql.library.CqlVersionedIdentifier in project quality-measure-and-cohort-service by Alvearie.

the class CqlEvaluatorIntegrationTest method testPatientIsFemaleTrue.

@Test
public void testPatientIsFemaleTrue() throws Exception {
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
    CqlEvaluator evaluator = setupTestFor(patient, "cql.basic");
    String expression = "Female";
    CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("Test", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
    Map<String, Object> expected = new HashMap<>();
    expected.put(expression, true);
    Assert.assertEquals(expected, actual.getExpressionResults());
}

Example 23 with CqlVersionedIdentifier

use of com.ibm.cohort.cql.library.CqlVersionedIdentifier in project quality-measure-and-cohort-service by Alvearie.

the class CqlEvaluatorIntegrationTest method testConditionDateRangeCriteriaMatched.

@Test
public void testConditionDateRangeCriteriaMatched() throws Exception {
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
    DateFormat sdf = new SimpleDateFormat("yyyy-MM-dd");
    Date date = sdf.parse("2000-01-01");
    Condition condition = new Condition();
    condition.setId("condition");
    condition.setSubject(new Reference("Patient/123"));
    condition.setRecordedDate(date);
    // Wiremock does not support request matching withQueryParam() function does not support
    // the same parameter multiple times, so we do some regex work and try to make it
    // somewhat order independent while still readable.
    // @see https://github.com/tomakehurst/wiremock/issues/398
    MappingBuilder builder = get(urlMatching("/Condition\\?(recorded-date=[lg]e.*&){2}subject=Patient%2F123&_format=json"));
    mockFhirResourceRetrieval(builder, condition);
    FhirServerConfig fhirConfig = getFhirServerConfig();
    CqlEvaluator evaluator = setupTestFor(patient, fhirConfig, "cql.condition", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
    Map<String, Parameter> parameters = new HashMap<>();
    parameters.put("MeasurementPeriod", new IntervalParameter(new DatetimeParameter("1999-01-01T00:00:00-05:00"), true, new DatetimeParameter("2000-01-01T00:00:00-05:00"), false));
    String expression = "ConditionInInterval";
    CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("TestDateQuery", "1.0.0"), parameters, newPatientContext("123"), Collections.singleton(expression));
    Assert.assertEquals(1, actual.getExpressionResults().size());
    List<Object> value = (List) actual.getExpressionResults().get(expression);
    Assert.assertEquals(1, value.size());
    assertFhirEquals(condition, (IBaseResource) value.get(0));
}

Example 24 with CqlVersionedIdentifier

use of com.ibm.cohort.cql.library.CqlVersionedIdentifier in project quality-measure-and-cohort-service by Alvearie.

the class CqlEvaluatorIntegrationTest method testInvalidLibraryName.

@Test(expected = IllegalArgumentException.class)
public void testInvalidLibraryName() throws Exception {
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
    CqlEvaluator evaluator = setupTestFor(patient, "cql.basic");
    String expression = "Female";
    evaluator.evaluate(new CqlVersionedIdentifier("NotCorrect", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
}

Example 25 with CqlVersionedIdentifier

use of com.ibm.cohort.cql.library.CqlVersionedIdentifier in project quality-measure-and-cohort-service by Alvearie.

the class CqlTemporalTests method noEventWithinFourDays.

@Test
public void noEventWithinFourDays() throws Exception {
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
    FhirServerConfig fhirConfig = getFhirServerConfig();
    Observation observationIN = new Observation();
    DateTimeType observationEffective = new DateTimeType(new Date());
    observationEffective.setYear(2015);
    observationEffective.setMonth(1);
    observationEffective.setDay(15);
    observationIN.setEffective(observationEffective);
    Observation observationOUT = new Observation();
    DateTimeType observationEffective2 = new DateTimeType(new Date());
    observationEffective2.setYear(2015);
    observationEffective2.setMonth(1);
    observationEffective2.setDay(25);
    observationOUT.setEffective(observationEffective2);
    Bundle bundle = new Bundle();
    Bundle.BundleEntryComponent firstEncounter = new Bundle.BundleEntryComponent();
    firstEncounter.setResource(observationIN);
    Bundle.BundleEntryComponent secondEncounter = new Bundle.BundleEntryComponent();
    secondEncounter.setResource(observationOUT);
    bundle.addEntry(firstEncounter);
    bundle.addEntry(secondEncounter);
    mockFhirResourceRetrieval("/Observation?subject=Patient%2F123&_format=json", getFhirParser(), bundle, fhirConfig);
    mockFhirResourceRetrieval("/Condition?subject=Patient%2F123&_format=json", getFhirParser(), CONDITION_IN, fhirConfig);
    CqlEvaluator evaluator = setupTestFor(patient, "cql.temporal", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
    String expression = "ValidObservation not within 4 days";
    CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("Test5", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
    Map<String, Object> expected = new HashMap<>();
    expected.put(expression, true);
    Assert.assertEquals(expected, actual.getExpressionResults());
}