Examples with CqlVersionedIdentifier com.ibm.cohort.cql.library.CqlVersionedIdentifier used on opensource projects

Example 26 with CqlVersionedIdentifier

use of com.ibm.cohort.cql.library.CqlVersionedIdentifier in project quality-measure-and-cohort-service by Alvearie.

the class CqlTemporalTests method cannotFindEncountersThatDontExist.

@Test
public void cannotFindEncountersThatDontExist() throws Exception {
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
    FhirServerConfig fhirConfig = getFhirServerConfig();
    Bundle bundle = new Bundle();
    Bundle.BundleEntryComponent firstEncounter = new Bundle.BundleEntryComponent();
    firstEncounter.setResource(ENCOUNTER_1);
    Bundle.BundleEntryComponent secondEncounter = new Bundle.BundleEntryComponent();
    secondEncounter.setResource(ENCOUNTER_3);
    bundle.addEntry(firstEncounter);
    bundle.addEntry(secondEncounter);
    mockFhirResourceRetrieval("/Encounter?subject=Patient%2F123&_format=json", getFhirParser(), bundle, fhirConfig);
    CqlEvaluator evaluator = setupTestFor(patient, "cql.temporal", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
    String expression = "ValidEncounters2";
    CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("Test3", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
    Map<String, Object> expected = new HashMap<>();
    expected.put(expression, false);
    Assert.assertEquals(expected, actual.getExpressionResults());
}

Example 27 with CqlVersionedIdentifier

use of com.ibm.cohort.cql.library.CqlVersionedIdentifier in project quality-measure-and-cohort-service by Alvearie.

the class CqlTemporalTests method cannotFindEventWithoutExistenceOfThirdEvent.

@Test
public void cannotFindEventWithoutExistenceOfThirdEvent() throws Exception {
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
    Observation observation = new Observation();
    DateTimeType observationEffective = new DateTimeType(new Date());
    observationEffective.setYear(2015);
    observationEffective.setMonth(2);
    observationEffective.setDay(5);
    observation.setEffective(observationEffective);
    FhirServerConfig fhirConfig = getFhirServerConfig();
    mockFhirResourceRetrieval("/Condition?subject=Patient%2F123&_format=json", getFhirParser(), CONDITION_IN, fhirConfig);
    mockFhirResourceRetrieval("/Encounter?subject=Patient%2F123&_format=json", getFhirParser(), ENCOUNTER_1, fhirConfig);
    mockFhirResourceRetrieval("/Observation?subject=Patient%2F123&_format=json", getFhirParser(), observation, fhirConfig);
    CqlEvaluator evaluator = setupTestFor(patient, "cql.temporal", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
    String expression = "ObservationWithin30DaysOfCondition";
    CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("Test2", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
    Map<String, Object> expected = new HashMap<>();
    expected.put(expression, false);
    Assert.assertEquals(expected, actual.getExpressionResults());
}

Example 28 with CqlVersionedIdentifier

use of com.ibm.cohort.cql.library.CqlVersionedIdentifier in project quality-measure-and-cohort-service by Alvearie.

the class CqlTemporalTests method eventHappensWithin4Days.

@Test
public void eventHappensWithin4Days() throws Exception {
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
    FhirServerConfig fhirConfig = getFhirServerConfig();
    Observation observationIN = new Observation();
    DateTimeType observationEffective = new DateTimeType(new Date());
    observationEffective.setYear(2015);
    observationEffective.setMonth(1);
    observationEffective.setDay(15);
    observationIN.setEffective(observationEffective);
    observationIN.setId("FIRST");
    Observation observationOUT = new Observation();
    DateTimeType observationEffective2 = new DateTimeType(new Date());
    observationEffective2.setYear(2015);
    observationEffective2.setMonth(1);
    observationEffective2.setDay(16);
    observationOUT.setEffective(observationEffective2);
    observationOUT.setId("SECOND");
    Bundle bundle = new Bundle();
    Bundle.BundleEntryComponent firstEncounter = new Bundle.BundleEntryComponent();
    firstEncounter.setResource(observationIN);
    Bundle.BundleEntryComponent secondEncounter = new Bundle.BundleEntryComponent();
    secondEncounter.setResource(observationOUT);
    bundle.addEntry(firstEncounter);
    bundle.addEntry(secondEncounter);
    mockFhirResourceRetrieval("/Observation?subject=Patient%2F123&_format=json", getFhirParser(), bundle, fhirConfig);
    mockFhirResourceRetrieval("/Condition?subject=Patient%2F123&_format=json", getFhirParser(), CONDITION_IN, fhirConfig);
    CqlEvaluator evaluator = setupTestFor(patient, "cql.temporal", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
    String expression = "ValidObservation within 4 days";
    CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("Test5", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
    Map<String, Object> expected = new HashMap<>();
    expected.put(expression, true);
    Assert.assertEquals(expected, actual.getExpressionResults());
}

Example 29 with CqlVersionedIdentifier

use of com.ibm.cohort.cql.library.CqlVersionedIdentifier in project quality-measure-and-cohort-service by Alvearie.

the class CqlTemporalTests method doesNotFindEventAfterSecondEvent.

@Test
public void doesNotFindEventAfterSecondEvent() throws Exception {
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
    Observation observationOUT = new Observation();
    DateTimeType observationEffective2 = new DateTimeType(new Date());
    observationEffective2.setYear(2017);
    observationEffective2.setMonth(1);
    observationEffective2.setDay(15);
    observationOUT.setEffective(observationEffective2);
    FhirServerConfig fhirConfig = getFhirServerConfig();
    mockFhirResourceRetrieval("/Condition?subject=Patient%2F123&_format=json", getFhirParser(), CONDITION_IN, fhirConfig);
    mockFhirResourceRetrieval("/Encounter?subject=Patient%2F123&_format=json", getFhirParser(), ENCOUNTER_1, fhirConfig);
    mockFhirResourceRetrieval("/Observation?subject=Patient%2F123&_format=json", getFhirParser(), observationOUT, fhirConfig);
    CqlEvaluator evaluator = setupTestFor(patient, "cql.temporal", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
    String expression = "Observations Exist";
    CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("Test1", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
    Map<String, Object> expected = new HashMap<>();
    expected.put(expression, false);
    Assert.assertEquals(expected, actual.getExpressionResults());
}

Example 30 with CqlVersionedIdentifier

use of com.ibm.cohort.cql.library.CqlVersionedIdentifier in project quality-measure-and-cohort-service by Alvearie.

the class CqlTemporalTests method confirmCanFindEventAfterSecondEvent.

@Test
public void confirmCanFindEventAfterSecondEvent() throws Exception {
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, null);
    Observation observationIN = new Observation();
    DateTimeType observationEffective = new DateTimeType(new Date());
    observationEffective.setYear(2015);
    observationEffective.setMonth(1);
    observationEffective.setDay(15);
    observationIN.setEffective(observationEffective);
    FhirServerConfig fhirConfig = getFhirServerConfig();
    mockFhirResourceRetrieval("/Condition?subject=Patient%2F123&_format=json", getFhirParser(), CONDITION_IN, fhirConfig);
    mockFhirResourceRetrieval("/Encounter?subject=Patient%2F123&_format=json", getFhirParser(), ENCOUNTER_1, fhirConfig);
    mockFhirResourceRetrieval("/Observation?subject=Patient%2F123&_format=json", getFhirParser(), observationIN, fhirConfig);
    CqlEvaluator evaluator = setupTestFor(patient, "cql.temporal", ClasspathCqlLibraryProvider.FHIR_HELPERS_CLASSPATH);
    String expression = "Observations Exist";
    CqlEvaluationResult actual = evaluator.evaluate(new CqlVersionedIdentifier("Test1", "1.0.0"), null, newPatientContext("123"), Collections.singleton(expression));
    Map<String, Object> expected = new HashMap<>();
    expected.put(expression, true);
    Assert.assertEquals(expected, actual.getExpressionResults());
}