use of com.ibm.cohort.engine.measure.Identifier in project quality-measure-and-cohort-service by Alvearie.
the class MeasureContextProvider method getMeasureContexts.
public static List<MeasureContext> getMeasureContexts(File input) throws IOException {
ObjectMapper objectMapper = new ObjectMapper();
ExecutionConfiguration parsedInput = objectMapper.readValue(input, ExecutionConfiguration.class);
// Throws an exception if invalid input is encountered
parsedInput.validate();
return parsedInput.getMeasureConfigurations().stream().map(x -> {
MeasureIdentifier measureIdentifier = x.getIdentifier();
Identifier identifier = null;
if (measureIdentifier != null) {
identifier = new Identifier(measureIdentifier.getSystem(), measureIdentifier.getValue());
}
return new MeasureContext(x.getMeasureId(), x.getParameters(), identifier, x.getVersion());
}).collect(Collectors.toList());
}
use of com.ibm.cohort.engine.measure.Identifier in project quality-measure-and-cohort-service by Alvearie.
the class CohortEngineRestHandlerTest method testEvaluateMeasureMoreThanOneFormOfId.
@PrepareForTest({ Response.class, TenantManager.class, ServiceBaseUtility.class })
@Test
public void testEvaluateMeasureMoreThanOneFormOfId() throws Exception {
prepMocks();
PowerMockito.mockStatic(ServiceBaseUtility.class);
PowerMockito.when(ServiceBaseUtility.apiSetup(VERSION, logger, MethodNames.EVALUATE_MEASURE.getName())).thenReturn(null);
mockResponseClasses();
Library library = TestHelper.getTemplateLibrary();
Measure measure = TestHelper.getTemplateMeasure(library);
Patient patient = getPatient("patientId", AdministrativeGender.MALE, 40);
mockFhirResourceRetrieval("/metadata", getCapabilityStatement());
mockFhirResourceRetrieval(patient);
FhirServerConfig clientConfig = getFhirServerConfig();
Map<String, Parameter> parameterOverrides = new HashMap<>();
parameterOverrides.put("Measurement Period", new IntervalParameter(new DateParameter("2019-07-04"), true, new DateParameter("2020-07-04"), true));
MeasureContext measureContext = new MeasureContext(measure.getId(), parameterOverrides, new Identifier().setValue("identifier"));
MeasureEvaluation evaluationRequest = new MeasureEvaluation();
evaluationRequest.setDataServerConfig(clientConfig);
evaluationRequest.setPatientId(patient.getId());
evaluationRequest.setMeasureContext(measureContext);
// evaluationRequest.setEvidenceOptions(evidenceOptions);
FhirContext fhirContext = FhirContext.forR4();
IParser parser = fhirContext.newJsonParser().setPrettyPrint(true);
// Create the metadata part of the request
ObjectMapper om = new ObjectMapper();
String json = om.writeValueAsString(evaluationRequest);
ByteArrayInputStream jsonIs = new ByteArrayInputStream(json.getBytes());
IAttachment rootPart = mockAttachment(jsonIs);
// Create the ZIP part of the request
ByteArrayOutputStream baos = new ByteArrayOutputStream();
TestHelper.createMeasureArtifact(baos, parser, measure, library);
ByteArrayInputStream zipIs = new ByteArrayInputStream(baos.toByteArray());
IAttachment measurePart = mockAttachment(zipIs);
// Assemble them together into a reasonable facsimile of the real request
IMultipartBody body = mock(IMultipartBody.class);
when(body.getAttachment(CohortEngineRestHandler.REQUEST_DATA_PART)).thenReturn(rootPart);
when(body.getAttachment(CohortEngineRestHandler.MEASURE_PART)).thenReturn(measurePart);
Response loadResponse = restHandler.evaluateMeasure(mockRequestContext, VERSION, body);
assertNotNull(loadResponse);
PowerMockito.verifyStatic(Response.class);
Response.status(400);
}
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