Examples with DocumentException com.lowagie.text.DocumentException used on opensource projects

Example 16 with DocumentException

use of com.lowagie.text.DocumentException in project vcell by virtualcell.

the class ITextWriter method writeBioModel.

public void writeBioModel(BioModel bioModel, FileOutputStream fos, PageFormat pageFormat, PublishPreferences preferences) throws Exception {
    if (bioModel == null || fos == null || pageFormat == null || preferences == null) {
        throw new IllegalArgumentException("One or more null params while publishing BioModel.");
    }
    try {
        createDocument(pageFormat);
        createDocWriter(fos);
        // Add metadata before you open the document...
        String name = bioModel.getName().trim();
        String userName = "Unknown";
        if (bioModel.getVersion() != null) {
            userName = bioModel.getVersion().getOwner().getName();
        }
        document.addTitle(name + "[owned by " + userName + "]");
        document.addCreator("Virtual Cell");
        document.addCreationDate();
        // writeWatermark(document, pageFormat);
        writeHeaderFooter("BioModel: " + name);
        document.open();
        // 
        Section introSection = null;
        int chapterNum = 1;
        if (preferences.includePhysio()) {
            Chapter physioChapter = new Chapter("Physiology For " + name, chapterNum++);
            introSection = physioChapter.addSection("General Info", physioChapter.numberDepth() + 1);
            String freeTextAnnotation = bioModel.getVCMetaData().getFreeTextAnnotation(bioModel);
            writeMetadata(introSection, name, freeTextAnnotation, userName, "BioModel");
            writeModel(physioChapter, bioModel.getModel());
            document.add(physioChapter);
        }
        if (preferences.includeApp()) {
            SimulationContext[] simContexts = bioModel.getSimulationContexts();
            if (simContexts.length > 0) {
                Chapter simContextsChapter = new Chapter("Applications For " + name, chapterNum++);
                if (introSection == null) {
                    introSection = simContextsChapter.addSection("General Info", simContextsChapter.numberDepth() + 1);
                    String freeTextAnnotation = bioModel.getVCMetaData().getFreeTextAnnotation(bioModel);
                    writeMetadata(introSection, name, freeTextAnnotation, userName, "BioModel");
                }
                for (int i = 0; i < simContexts.length; i++) {
                    writeSimulationContext(simContextsChapter, simContexts[i], preferences);
                }
                document.add(simContextsChapter);
            } else {
                System.err.println("Bad Request: No applications to publish for Biomodel: " + bioModel.getName());
            }
        }
        document.close();
    } catch (DocumentException e) {
        System.err.println("Unable to publish BioModel.");
        e.printStackTrace();
        throw e;
    }
}

Example 17 with DocumentException

use of com.lowagie.text.DocumentException in project vcell by virtualcell.

the class ITextWriter method writeReactions.

// each reaction has its own table, ordered by the structures.
protected void writeReactions(Chapter physioChapter, Model model) throws DocumentException {
    if (model == null) {
        return;
    }
    Paragraph reactionParagraph = new Paragraph();
    reactionParagraph.add(new Chunk("Structures and Reactions Diagram").setLocalDestination(model.getName()));
    Section reactionDiagramSection = physioChapter.addSection(reactionParagraph, physioChapter.numberDepth() + 1);
    try {
        addImage(reactionDiagramSection, encodeJPEG(generateDocReactionsImage(model, null)));
    } catch (Exception e) {
        e.printStackTrace();
        throw new DocumentException(e.getClass().getName() + ": " + e.getMessage());
    }
    for (int i = 0; i < model.getNumStructures(); i++) {
        ReactionStep[] reactionSteps = model.getReactionSteps();
        ReactionStep rs = null;
        Table modifierTable = null;
        Table reactionTable = null;
        boolean firstTime = true;
        Section reactStructSection = null;
        for (int j = 0; j < reactionSteps.length; j++) {
            if (reactionSteps[j].getStructure() == model.getStructure(i)) {
                // can also use structureName1.equals(structureName2)
                if (firstTime) {
                    Paragraph linkParagraph = new Paragraph();
                    linkParagraph.add(new Chunk("Reaction(s) in " + model.getStructure(i).getName()).setLocalDestination(model.getStructure(i).getName()));
                    reactStructSection = physioChapter.addSection(linkParagraph, physioChapter.numberDepth() + 1);
                    firstTime = false;
                }
                rs = reactionSteps[j];
                String type;
                if (rs instanceof SimpleReaction) {
                    type = "Reaction";
                } else {
                    type = "Flux";
                }
                // write Reaction equation as a table
                // Get the image arrow cell depending on type of reactionStep : MassAction => double arrow, otherwise, forward arrow
                boolean bReversible = false;
                if (rs.getKinetics() instanceof MassActionKinetics) {
                    bReversible = true;
                }
                Cell arrowImageCell = getReactionArrowImageCell(bReversible);
                // Get reactants and products strings
                ReactionCanvas rc = new ReactionCanvas();
                rc.setReactionStep(rs);
                ReactionCanvasDisplaySpec rcdSpec = rc.getReactionCanvasDisplaySpec();
                String reactants = rcdSpec.getLeftText();
                String products = rcdSpec.getRightText();
                // Create table and add cells for reactants, arrow(s) images, products
                int[] widths = { 8, 1, 8 };
                reactionTable = getTable(3, 100, 0, 2, 2);
                // Add reactants as cell
                Cell tableCell = createCell(reactants, getBold());
                tableCell.setHorizontalAlignment(Cell.ALIGN_RIGHT);
                tableCell.setBorderColor(Color.white);
                reactionTable.addCell(tableCell);
                // add arrow(s) image as cell
                if (arrowImageCell != null) {
                    arrowImageCell.setHorizontalAlignment(Cell.ALIGN_CENTER);
                    arrowImageCell.setBorderColor(Color.white);
                    reactionTable.addCell(arrowImageCell);
                }
                // add products as cell
                tableCell = createCell(products, getBold());
                tableCell.setBorderColor(Color.white);
                reactionTable.addCell(tableCell);
                // reactionTable.setBorderColor(Color.white);
                reactionTable.setWidths(widths);
                // Identify modifiers,
                ReactionParticipant[] rpArr = rs.getReactionParticipants();
                Vector<ReactionParticipant> modifiersVector = new Vector<ReactionParticipant>();
                for (int k = 0; k < rpArr.length; k += 1) {
                    if (rpArr[k] instanceof Catalyst) {
                        modifiersVector.add(rpArr[k]);
                    }
                }
                // Write the modifiers in a separate table, if present
                if (modifiersVector.size() > 0) {
                    modifierTable = getTable(1, 50, 0, 1, 1);
                    modifierTable.addCell(createCell("Modifiers List", getBold(DEF_HEADER_FONT_SIZE), 1, 1, Element.ALIGN_CENTER, true));
                    StringBuffer modifierNames = new StringBuffer();
                    for (int k = 0; k < modifiersVector.size(); k++) {
                        modifierNames.append(((Catalyst) modifiersVector.elementAt(k)).getName() + "\n");
                    }
                    modifierTable.addCell(createCell(modifierNames.toString().trim(), getFont()));
                    modifiersVector.removeAllElements();
                }
                Section reactionSection = reactStructSection.addSection(type + " " + rs.getName(), reactStructSection.numberDepth() + 1);
                // Annotation
                VCMetaData vcMetaData = rs.getModel().getVcMetaData();
                if (vcMetaData.getFreeTextAnnotation(rs) != null) {
                    Table annotTable = getTable(1, 100, 1, 3, 3);
                    annotTable.addCell(createCell("Reaction Annotation", getBold(DEF_HEADER_FONT_SIZE), 1, 1, Element.ALIGN_CENTER, true));
                    annotTable.addCell(createCell(vcMetaData.getFreeTextAnnotation(rs), getFont()));
                    reactionSection.add(annotTable);
                // reactionSection.add(new Paragraph("\""+rs.getAnnotation()+"\""));
                }
                // reaction table
                if (reactionTable != null) {
                    reactionSection.add(reactionTable);
                    // re-set reactionTable
                    reactionTable = null;
                }
                if (modifierTable != null) {
                    reactionSection.add(modifierTable);
                    modifierTable = null;
                }
                // Write kinetics parameters, etc. in a table
                writeKineticsParams(reactionSection, rs);
            }
        }
    }
}

Example 18 with DocumentException

use of com.lowagie.text.DocumentException in project janrufmonitor by tbrandt77.

the class PDFCallerListFilter method doExport.

public boolean doExport() {
    Document document = new Document(PageSize.A4.rotate());
    document.addCreationDate();
    document.addCreator("jAnrufmonitor");
    try {
        PdfWriter.getInstance(document, new FileOutputStream(this.m_filename));
        document.open();
        // get renderers
        List renderer = new ArrayList();
        String renderer_config = this.getRuntime().getConfigManagerFactory().getConfigManager().getProperty("ui.jface.application.editor.Editor", "renderer");
        if (renderer_config != null && renderer_config.length() > 0) {
            StringTokenizer s = new StringTokenizer(renderer_config, ",");
            while (s.hasMoreTokens()) {
                renderer.add(RendererRegistry.getInstance().getRenderer(s.nextToken()));
            }
        }
        // get column width
        float totalWidth = 0;
        String[] cWidth = new String[renderer.size()];
        for (int i = 0, j = renderer.size(); i < j; i++) {
            cWidth[i] = getRuntime().getConfigManagerFactory().getConfigManager().getProperty("ui.jface.application.editor.Editor", "col_size_" + ((ITableCellRenderer) renderer.get(i)).getID());
            if (cWidth[i] != null && cWidth[i].length() > 0) {
                totalWidth += Float.parseFloat(cWidth[i]);
            }
            if (cWidth[i] != null && cWidth[i].length() == 0) {
                cWidth[i] = "0";
            }
        }
        float[] widths = new float[renderer.size()];
        for (int i = 0, j = renderer.size(); i < j; i++) {
            widths[i] = Float.parseFloat(cWidth[i]) / totalWidth;
        }
        PdfPTable table = new PdfPTable(widths);
        table.setHeaderRows(1);
        table.setWidthPercentage(100f);
        ITableCellRenderer t = null;
        PdfPCell cell = null;
        for (int i = 0, j = renderer.size(); i < j; i++) {
            t = (ITableCellRenderer) renderer.get(i);
            if (t == null) {
                this.m_logger.severe("No renderer found for ID: " + (String) renderer.get(i));
                this.m_logger.severe("Export to PDF format canceled...");
                return false;
            }
            cell = new PdfPCell(new Paragraph(t.getHeader()));
            cell.setBackgroundColor(new Color(0xC0, 0xC0, 0xC0));
            table.addCell(cell);
        }
        ICaller c = null;
        String cellContent = null;
        Color iterateColor1 = new Color(0xDD, 0xDD, 0xDD);
        Color iterateColor2 = new Color(0xFF, 0xFF, 0xFF);
        cell = null;
        int type_col = -1, num_col = -1;
        for (int i = 0, j = this.m_callerList.size(); i < j; i++) {
            c = this.m_callerList.get(i);
            for (int k = 0, m = renderer.size(); k < m; k++) {
                t = (ITableCellRenderer) renderer.get(k);
                t.updateData(c);
                // find number and typ column for multiline callers
                if (t.getID().equalsIgnoreCase("NumberType"))
                    type_col = k;
                if (t.getID().equalsIgnoreCase("Number"))
                    num_col = k;
                cellContent = t.renderAsText();
                if (cellContent != null && cellContent.length() > 0) {
                    cell = new PdfPCell(new Phrase(cellContent));
                    cell.setBackgroundColor((i % 2 == 0 ? iterateColor1 : iterateColor2));
                    table.addCell(cell);
                } else {
                    cellContent = t.renderAsImageID();
                    if (cellContent != null && cellContent.length() > 0) {
                        if (cellContent.startsWith("db://")) {
                            InputStream in = ImageHandler.getInstance().getImageStream(c);
                            if (in != null) {
                                ByteArrayOutputStream out = new ByteArrayOutputStream();
                                Stream.copy(in, out, true);
                                in.close();
                                out.close();
                                Image pdfImage = Image.getInstance(out.toByteArray());
                                // pdfImage.scaleAbsolute(90.0f, 45.0f);
                                table.addCell(pdfImage);
                            } else {
                                table.addCell(" ");
                            }
                        } else if (new File(cellContent).exists()) {
                            Image pdfImage = Image.getInstance(cellContent);
                            table.addCell(pdfImage);
                        } else {
                            Image pdfImage = Image.getInstance(SWTImageManager.getInstance(PIMRuntime.getInstance()).getImagePath(cellContent));
                            table.addCell(pdfImage);
                        }
                    // ((Image pdfImage = Image.getInstance(cellContent);
                    // cell = new PdfPCell(pdfImage);
                    // cell.setBackgroundColor((i%2==0 ? iterateColor1 : iterateColor2));
                    // table.addCell(pdfImage);
                    } else {
                        cell = new PdfPCell(new Phrase(" "));
                        cell.setBackgroundColor((i % 2 == 0 ? iterateColor1 : iterateColor2));
                        table.addCell(cell);
                    }
                }
                // last column reached check for multiline caller
                if (k == m - 1 && (type_col > -1 || num_col > -1) && (c instanceof IMultiPhoneCaller) && (((IMultiPhoneCaller) c).getPhonenumbers().size() > 1)) {
                    List phones = ((IMultiPhoneCaller) c).getPhonenumbers();
                    IPhonenumber pn = null;
                    for (int y = 1, z = phones.size(); y < z; y++) {
                        pn = (IPhonenumber) phones.get(y);
                        for (int w = 0, x = renderer.size(); w < x; w++) {
                            t = (ITableCellRenderer) renderer.get(w);
                            if (t.getID().equalsIgnoreCase("NumberType") || t.getID().equalsIgnoreCase("Number")) {
                                if (t.getID().equalsIgnoreCase("NumberType")) {
                                    final IPhonenumber lpn = pn;
                                    final IAttributeMap lam = c.getAttributes();
                                    t.updateData(new ITreeItemCallerData() {

                                        public IAttributeMap getAttributes() {
                                            return lam;
                                        }

                                        public IPhonenumber getPhone() {
                                            return lpn;
                                        }
                                    });
                                } else
                                    t.updateData(pn);
                                cellContent = t.renderAsText();
                                if (cellContent != null && cellContent.length() > 0) {
                                    cell = new PdfPCell(new Phrase(cellContent));
                                    cell.setBackgroundColor((i % 2 == 0 ? iterateColor1 : iterateColor2));
                                    table.addCell(cell);
                                } else {
                                    cell = new PdfPCell(new Phrase(" "));
                                    cell.setBackgroundColor((i % 2 == 0 ? iterateColor1 : iterateColor2));
                                    table.addCell(cell);
                                }
                            } else {
                                cell = new PdfPCell(new Phrase(" "));
                                cell.setBackgroundColor((i % 2 == 0 ? iterateColor1 : iterateColor2));
                                table.addCell(cell);
                            }
                        }
                    }
                }
            }
        }
        document.add(table);
    } catch (DocumentException de) {
        this.m_logger.severe(de.getMessage());
        return false;
    } catch (IOException ioe) {
        this.m_logger.severe(ioe.getMessage());
        return false;
    } finally {
        document.close();
    }
    return true;
}

Example 19 with DocumentException

use of com.lowagie.text.DocumentException in project janrufmonitor by tbrandt77.

the class PDFCreator method createPdf.

public void createPdf() {
    Document document = new Document(PageSize.A4);
    document.addCreationDate();
    document.addCreator("jAnrufmonitor");
    try {
        PdfWriter.getInstance(document, new FileOutputStream(this.m_file));
        document.open();
        document.add(new Paragraph(this.getI18nManager().getString(getNamespce(), "pdftitle", "label", getLanguage()), FontFactory.getFont(FontFactory.HELVETICA, 16f, Font.BOLD | Font.UNDERLINE)));
        document.add(new Paragraph(" "));
        String msg = "";
        ITableCellRenderer tcr = RendererRegistry.getInstance().getRenderer("name");
        if (tcr != null) {
            tcr.updateData(m_cc.getCaller());
            msg += tcr.renderAsText();
        }
        tcr = RendererRegistry.getInstance().getRenderer("number");
        if (tcr != null) {
            tcr.updateData(m_cc.getCaller());
            msg += "\n" + tcr.renderAsText() + "\n";
        }
        document.add(new Paragraph(msg));
        document.add(new Paragraph(" "));
        List comments = m_cc.getComments();
        Collections.sort(comments, new CommentComparator());
        IComment c = null;
        PdfPTable table = new PdfPTable(1);
        table.setWidthPercentage(100f);
        PdfPCell cp = null;
        Paragraph pp = null;
        Color iterateColor1 = new Color(0xDD, 0xDD, 0xDD);
        Color iterateColor2 = new Color(0xFF, 0xFF, 0xFF);
        for (int i = 0; i < comments.size(); i++) {
            cp = new PdfPCell();
            cp.setBackgroundColor((i % 2 == 0 ? iterateColor1 : iterateColor2));
            pp = new Paragraph();
            Paragraph p = new Paragraph();
            c = (IComment) comments.get(i);
            IAttribute att = c.getAttributes().get(IComment.COMMENT_ATTRIBUTE_SUBJECT);
            if (att != null && att.getValue().length() > 0) {
                p.add(new Chunk(this.getI18nManager().getString(getNamespce(), "pdfsubject", "label", getLanguage()), FontFactory.getFont(FontFactory.HELVETICA, 14f, Font.BOLD)));
                p.add(new Chunk(att.getValue(), FontFactory.getFont(FontFactory.HELVETICA, 14f, Font.BOLD)));
                pp.add(p);
                p = new Paragraph();
            }
            p.add(new Chunk(this.getI18nManager().getString(getNamespce(), "pdfdate", "label", getLanguage()), FontFactory.getFont(FontFactory.HELVETICA, 12f, Font.BOLD)));
            p.add(new Chunk(getFormatter().parse(IJAMConst.GLOBAL_VARIABLE_CALLTIME, c.getDate())));
            pp.add(p);
            p = new Paragraph();
            p.add(new Chunk(this.getI18nManager().getString(getNamespce(), "pdfstatus", "label", getLanguage()), FontFactory.getFont(FontFactory.HELVETICA, 12f, Font.BOLD)));
            p.add(new Chunk(c.getAttributes().get(IComment.COMMENT_ATTRIBUTE_STATUS).getValue()));
            pp.add(p);
            att = c.getAttributes().get(IComment.COMMENT_ATTRIBUTE_FOLLOWUP);
            if (att != null && att.getValue().equalsIgnoreCase(IJAMConst.ATTRIBUTE_VALUE_YES)) {
                p = new Paragraph();
                Chunk cu = new Chunk(this.getI18nManager().getString(getNamespce(), "pdffollowup", "label", getLanguage()), FontFactory.getFont(FontFactory.HELVETICA, 12f, Font.BOLD));
                cu.setBackground(new Color(0xFF, 0xFF, 0x00));
                p.add(cu);
                pp.add(p);
            }
            pp.add(new Paragraph(" "));
            p = new Paragraph(c.getText());
            pp.add(p);
            cp.addElement(pp);
            table.addCell(cp);
        }
        document.add(table);
    } catch (DocumentException de) {
        this.m_logger.severe(de.getMessage());
    } catch (IOException ioe) {
        this.m_logger.severe(ioe.getMessage());
    } finally {
        document.close();
    }
}

Example 20 with DocumentException

use of com.lowagie.text.DocumentException in project ofbiz-framework by apache.

the class PdfSurveyServices method setAcroFields.

/**
 */
public static Map<String, Object> setAcroFields(DispatchContext dctx, Map<String, ? extends Object> context) {
    Map<String, Object> results = ServiceUtil.returnSuccess();
    Delegator delegator = dctx.getDelegator();
    try {
        Map<String, Object> acroFieldMap = UtilGenerics.checkMap(context.get("acroFieldMap"));
        ByteBuffer byteBuffer = getInputByteBuffer(context, delegator);
        PdfReader r = new PdfReader(byteBuffer.array());
        ByteArrayOutputStream baos = new ByteArrayOutputStream();
        PdfStamper s = new PdfStamper(r, baos);
        AcroFields fs = s.getAcroFields();
        Map<String, Object> map = UtilGenerics.checkMap(fs.getFields());
        s.setFormFlattening(true);
        for (String fieldName : map.keySet()) {
            String fieldValue = fs.getField(fieldName);
            Object obj = acroFieldMap.get(fieldName);
            if (obj instanceof Date) {
                Date d = (Date) obj;
                fieldValue = UtilDateTime.toDateString(d);
            } else if (obj instanceof Long) {
                Long lg = (Long) obj;
                fieldValue = lg.toString();
            } else if (obj instanceof Integer) {
                Integer ii = (Integer) obj;
                fieldValue = ii.toString();
            } else {
                fieldValue = (String) obj;
            }
            if (UtilValidate.isNotEmpty(fieldValue)) {
                fs.setField(fieldName, fieldValue);
            }
        }
        s.close();
        baos.close();
        ByteBuffer outByteBuffer = ByteBuffer.wrap(baos.toByteArray());
        results.put("outByteBuffer", outByteBuffer);
    } catch (DocumentException | IOException | GeneralException e) {
        Debug.logError(e, module);
        results = ServiceUtil.returnError(e.getMessage());
    }
    return results;
}