Examples with Composition com.nedap.archie.rm.composition.Composition used on opensource projects

Example 21 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class FlatJsonUnmarshaller method unmarshal.

/**
 * Unmarshal flat Json to Composition
 *
 * @param flat the flat Json
 * @param introspect the introspect belonging to the template
 * @return
 */
public Composition unmarshal(String flat, WebTemplate introspect) {
    Set<String> consumedPath;
    Map<String, String> currentValues;
    consumedPath = new HashSet<>();
    try {
        currentValues = new HashMap<>();
        for (Iterator<Map.Entry<String, JsonNode>> it = OBJECT_MAPPER.readTree(flat).fields(); it.hasNext(); ) {
            Map.Entry<String, JsonNode> e = it.next();
            currentValues.put(e.getKey(), e.getValue().toString());
        }
        Composition generate = WebTemplateSkeletonBuilder.build(introspect, false);
        StdToCompositionWalker walker = new StdToCompositionWalker();
        DefaultValues defaultValues = new DefaultValues(currentValues);
        // put default for the defaults
        if (!defaultValues.containsDefaultValue(DefaultValuePath.TIME)) {
            defaultValues.addDefaultValue(DefaultValuePath.TIME, OffsetDateTime.now());
        }
        if (!defaultValues.containsDefaultValue(DefaultValuePath.SETTING)) {
            defaultValues.addDefaultValue(DefaultValuePath.SETTING, Setting.OTHER_CARE);
        }
        String templateId = generate.getArchetypeDetails().getTemplateId().getValue();
        walker.walk(generate, currentValues.entrySet().stream().collect(Collectors.toMap(e1 -> new FlatPathDto(e1.getKey()), Map.Entry::getValue)), introspect, defaultValues, templateId);
        consumedPath = walker.getConsumedPaths();
        if (!CollectionUtils.isEmpty(getUnconsumed(consumedPath, currentValues))) {
            throw new UnmarshalException(String.format("Could not consume Parts %s", getUnconsumed(consumedPath, currentValues)));
        }
        return generate;
    } catch (JsonProcessingException e) {
        throw new UnmarshalException(e.getMessage(), e);
    }
}

Example 22 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class DefaultValuesTest method unmarshal.

@Test
public void unmarshal() throws IOException, XmlException {
    OPERATIONALTEMPLATE template = TemplateDocument.Factory.parse(OperationalTemplateTestData.CORONA_ANAMNESE.getStream()).getTemplate();
    WebTemplate webTemplate = new OPTParser(template).parse();
    FlatJsonUnmarshaller cut = new FlatJsonUnmarshaller();
    String flat = IOUtils.toString(CompositionTestDataSimSDTJson.CORONA_WITH_CONTEXT.getStream(), StandardCharsets.UTF_8);
    Composition actual = cut.unmarshal(flat, webTemplate);
    assertThat(actual).isNotNull();
    assertThat(actual.getCategory()).isNotNull();
    assertThat(actual.getCategory().getValue()).isEqualTo("event");
    assertThat(actual.getLanguage()).isNotNull();
    assertThat(actual.getLanguage().getCodeString()).isEqualTo(Language.DE.getCode());
    assertThat(actual.getComposer()).isNotNull();
    assertThat(actual.getComposer()).getClass().isAssignableFrom(PartyIdentified.class);
    assertThat(((PartyIdentified) actual.getComposer()).getName()).isEqualTo("Silvia Blake");
    assertThat(actual.getComposer().getExternalRef().getNamespace()).isEqualTo("HOSPITAL-NS");
    assertThat(((GenericId) actual.getComposer().getExternalRef().getId()).getScheme()).isEqualTo("HOSPITAL-NS");
    assertThat(((GenericId) actual.getComposer().getExternalRef().getId()).getValue()).isEqualTo("123");
    assertThat(actual.getContext().getHealthCareFacility().getName()).isEqualTo("Hospital");
    assertThat(actual.getContext().getStartTime()).isNotNull();
    assertThat(actual.getContext().getStartTime().getValue()).isEqualTo(OffsetDateTime.of(2021, 4, 1, 12, 40, 31, 418954000, ZoneOffset.ofHours(2)));
    assertThat(actual.getContext().getParticipations()).extracting(p -> ((PartyIdentified) p.getPerformer())).flatExtracting(p -> p.getIdentifiers()).extracting(DvIdentifier::getAssigner, DvIdentifier::getId, DvIdentifier::getIssuer, DvIdentifier::getType).containsExactlyInAnyOrder(new Tuple("assigner1", "id1", "issuer1", "PERSON"), new Tuple("assigner2", "id2", "issuer2", "PERSON"), new Tuple("assigner3", "id3", "issuer3", "PERSON"), new Tuple("assigner4", "id4", "issuer4", "PERSON"));
    Observation observation = actual.getContent().stream().filter(c -> Observation.class.isAssignableFrom(c.getClass())).map(Observation.class::cast).findAny().orElse(null);
    assertThat(observation).isNotNull();
    assertThat(observation.getData()).isNotNull();
    assertThat(observation.getData().getOrigin().getValue()).isEqualTo(OffsetDateTime.of(2021, 4, 1, 12, 40, 31, 418954000, ZoneOffset.ofHours(2)));
    assertThat(observation.getData().getEvents().get(0).getTime().getValue()).isEqualTo(OffsetDateTime.of(2021, 4, 1, 12, 40, 31, 418954000, ZoneOffset.ofHours(2)));
    assertThat(observation.getOtherParticipations()).extracting(p -> p.getFunction().getValue(), p -> ((PartyIdentified) p.getPerformer()).getName(), p -> p.getPerformer().getExternalRef().getNamespace()).containsExactlyInAnyOrder(new Tuple("requester", "Dr. Marcus Johnson", "HOSPITAL-NS"), new Tuple("performer", "Lara Markham", "HOSPITAL-NS"));
    assertThat(observation.getOtherParticipations()).extracting(p -> ((PartyIdentified) p.getPerformer())).flatExtracting(p -> p.getIdentifiers()).extracting(DvIdentifier::getAssigner, DvIdentifier::getId, DvIdentifier::getIssuer, DvIdentifier::getType).containsExactlyInAnyOrder(new Tuple("assigner1", "id1", "issuer1", "PERSON"), new Tuple("assigner2", "id2", "issuer2", "PERSON"), new Tuple("assigner3", "id3", "issuer3", "PERSON"), new Tuple("assigner4", "id4", "issuer4", "PERSON"));
    assertThat(observation.getWorkflowId()).isNotNull();
    assertThat(observation.getWorkflowId().getNamespace()).isEqualTo("HOSPITAL-NS");
    assertThat(observation.getWorkflowId().getId().getValue()).isEqualTo("567");
    assertThat(observation.getWorkflowId().getType()).isEqualTo("ORGANISATION");
}

Example 23 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class CanonicalXMLTest method unmarshalWithDefaultSchema.

@Test
public void unmarshalWithDefaultSchema() throws IOException {
    String value = IOUtils.toString(CompositionTestDataCanonicalXML.DIADEM_DEFAULT_SCHEMA.getStream(), UTF_8);
    CanonicalXML cut = new CanonicalXML();
    Composition composition = cut.unmarshal(value, Composition.class);
    assertThat(composition).isNotNull();
// assertThat(composition.getArchetypeDetails().getTemplateId().getValue()).isEqualTo("test_all_types.en.v1");
}

Example 24 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class CanonicalXMLTest method marshal.

@Test
public void marshal() throws IOException {
    String value = IOUtils.toString(CompositionTestDataCanonicalXML.ALL_TYPES.getStream(), UTF_8);
    CanonicalXML cut = new CanonicalXML();
    Composition composition = cut.unmarshal(value, Composition.class);
    String marshal = cut.marshal(composition);
    assertThat(marshal).isNotEmpty();
}

Example 25 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class CanonicalXMLTest method unmarshal.

@Test
public void unmarshal() throws IOException {
    String value = IOUtils.toString(CompositionTestDataCanonicalXML.ALL_TYPES.getStream(), UTF_8);
    CanonicalXML cut = new CanonicalXML();
    Composition composition = cut.unmarshal(value, Composition.class);
    assertThat(composition).isNotNull();
    assertThat(composition.getArchetypeDetails().getTemplateId().getValue()).isEqualTo("test_all_types.en.v1");
}