Examples with Composition com.nedap.archie.rm.composition.Composition used on opensource projects

Example 31 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class FlatJsonMarshallerTest method toFlatJsonAllTypes.

@Test
public void toFlatJsonAllTypes() throws IOException, XmlException {
    OPERATIONALTEMPLATE template = TemplateDocument.Factory.parse(OperationalTemplateTestData.ALL_TYPES.getStream()).getTemplate();
    Composition composition = new CanonicalJson().unmarshal(IOUtils.toString(CompositionTestDataCanonicalJson.ALL_TYPES.getStream(), StandardCharsets.UTF_8), Composition.class);
    FlatJsonMarshaller cut = new FlatJsonMarshaller();
    String actual = cut.toFlatJson(composition, new OPTParser(template).parse());
    assertThat(actual).isNotNull();
    String expected = IOUtils.toString(CompositionTestDataSimSDTJson.ALL_TYPES.getStream(), StandardCharsets.UTF_8);
    List<String> errors = compere(actual, expected);
    checkErrors(errors, new String[] { "Missing path: test_all_types/test_all_types:0/identifier|id, value: 55175056", "Missing path: test_all_types/test_all_types:0/proportion_any|type, value: 1", "Missing path: test_all_types/test_all_types:0/proportion_any|precision, value: 1", "Missing path: test_all_types/test_all_types:0/duration_any, value: P1Y2M10DT2H30M", "Missing path: test_all_types/test_all_types2:0/uri, value: www.iana.org" }, new String[] { "Extra path: test_all_types/test_all_types:0/duration_any, value: PT30M", "Extra path: test_all_types/test_all_types:0/identifier, value: 55175056", "Extra path: test_all_types/test_all_types:0/proportion_any|type, value: 1.0" });
}

Example 32 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class FlatJsonUnmarshallerTest method unmarshal.

@Test
public void unmarshal() throws IOException, XmlException {
    OPERATIONALTEMPLATE template = TemplateDocument.Factory.parse(OperationalTemplateTestData.CORONA_ANAMNESE.getStream()).getTemplate();
    WebTemplate webTemplate = new OPTParser(template).parse();
    FlatJsonUnmarshaller cut = new FlatJsonUnmarshaller();
    String flat = IOUtils.toString(CompositionTestDataSimSDTJson.CORONA.getStream(), StandardCharsets.UTF_8);
    Composition actual = cut.unmarshal(flat, webTemplate);
    assertThat(actual).isNotNull();
    Observation observation = (Observation) actual.itemAtPath("/content[openEHR-EHR-OBSERVATION.story.v1]");
    assertThat(observation.getData().getOrigin().getValue()).hasToString("2020-05-11T22:53:12.039139+02:00");
    assertThat(observation.getSubject()).isNotNull();
    assertThat(observation.getSubject().getClass()).isEqualTo(PartySelf.class);
}

Example 33 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class RawJsonTest method marshallEmptyState.

@Test
public void marshallEmptyState() throws Exception {
    String json = IOUtils.toString(CompositionTestDataCanonicalJson.GECCO_LABORBEFUND.getStream(), UTF_8);
    Composition composition = new CanonicalJson().unmarshal(json, Composition.class);
    RawJson rawJson = new RawJson();
    String actual = rawJson.marshal(composition);
    assertThat(actual).isNotNull();
}

Example 34 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class FlatJsonTest method check.

private void check(String templateId, CompositionTestDataSimSDTJson testData, String[] expectedMissing, String[] expectedExtra) throws IOException {
    RMDataFormat cut = new FlatJasonProvider(templateProvider).buildFlatJson(FlatFormat.SIM_SDT, templateId);
    String flat = IOUtils.toString(testData.getStream(), StandardCharsets.UTF_8);
    Composition unmarshal = cut.unmarshal(flat);
    SoftAssertions softAssertions = new SoftAssertions();
    softAssertions.assertThat(unmarshal).isNotNull();
    RMObjectValidator rmObjectValidator = new RMObjectValidator(ArchieRMInfoLookup.getInstance(), s -> null);
    softAssertions.assertThat(rmObjectValidator.validate(unmarshal)).filteredOn(m -> !m.getMessage().contains("Inv_null_flavour_indicated")).containsExactlyInAnyOrder();
    String actual = cut.marshal(unmarshal);
    String expected = IOUtils.toString(testData.getStream(), StandardCharsets.UTF_8);
    List<String> errors = compere(actual, expected);
    softAssertions.assertThat(errors).filteredOn(s -> s.startsWith("Missing")).containsExactlyInAnyOrder(expectedMissing);
    softAssertions.assertThat(errors).filteredOn(s -> s.startsWith("Extra")).containsExactlyInAnyOrder(expectedExtra);
    softAssertions.assertAll();
}

Example 35 with Composition

use of com.nedap.archie.rm.composition.Composition in project openEHR_SDK by ehrbase.

the class FlatJsonTest method roundTripRaw.

@Test
public void roundTripRaw() throws IOException {
    CompositionTestDataSimSDTJson testData = CompositionTestDataSimSDTJson.CORONA_WITH_RAW;
    String templateId = "Corona_Anamnese";
    RMDataFormat cut = new FlatJasonProvider(templateProvider).buildFlatJson(FlatFormat.SIM_SDT, templateId);
    String flat = IOUtils.toString(testData.getStream(), StandardCharsets.UTF_8);
    Composition unmarshal = cut.unmarshal(flat);
    SoftAssertions softAssertions = new SoftAssertions();
    softAssertions.assertThat(unmarshal).isNotNull();
    RMObjectValidator rmObjectValidator = new RMObjectValidator(ArchieRMInfoLookup.getInstance(), s -> null);
    softAssertions.assertThat(rmObjectValidator.validate(unmarshal)).filteredOn(m -> !m.getMessage().contains("Inv_null_flavour_indicated")).containsExactlyInAnyOrder();
    String actual = cut.marshal(unmarshal);
    String expected = IOUtils.toString(CompositionTestDataSimSDTJson.CORONA.getStream(), StandardCharsets.UTF_8);
    List<String> errors = compere(actual, expected);
    softAssertions.assertThat(errors).filteredOn(s -> s.startsWith("Missing")).containsExactlyInAnyOrder();
    softAssertions.assertThat(errors).filteredOn(s -> s.startsWith("Extra")).containsExactlyInAnyOrder();
    softAssertions.assertAll();
}