Examples with TestDataTemplateProvider org.ehrbase.serialisation.templateprovider.TestDataTemplateProvider used on opensource projects

Example 1 with TestDataTemplateProvider

use of org.ehrbase.serialisation.templateprovider.TestDataTemplateProvider in project openEHR_SDK by ehrbase.

the class DBEncodeRoundTripTest method testAlternativeEventsRoundTrip.

@Test
@Ignore
public void testAlternativeEventsRoundTrip() throws IOException {
    String value = new String(Files.readAllBytes(Paths.get("src/test/resources/sample_data/alternative_events_reduced_flat.json")));
    RMDataFormat flatJson = new FlatJasonProvider(new TestDataTemplateProvider()).buildFlatJson(FlatFormat.SIM_SDT, "AlternativeEvents");
    Composition composition = flatJson.unmarshal(value);
    assertThat(composition).isNotNull();
    CompositionSerializer compositionSerializerRawJson = new CompositionSerializer();
    String db_encoded = compositionSerializerRawJson.dbEncode(composition);
    assertNotNull(db_encoded);
    String converted = new LightRawJsonEncoder(db_encoded).encodeCompositionAsString();
    assertNotNull(converted);
    Composition actual = new CanonicalJson().unmarshal(converted, Composition.class);
    String actualFlat = flatJson.marshal(actual);
    assertNotNull(actualFlat);
}

Example 2 with TestDataTemplateProvider

use of org.ehrbase.serialisation.templateprovider.TestDataTemplateProvider in project openEHR_SDK by ehrbase.

the class StructuredHelperTest method testStructuredToFlat.

private void testStructuredToFlat(CompositionTestDataStructuredJson structuredJson, CompositionTestDataSimSDTJson simSDTJson, String templateId) throws IOException {
    String flat = IOUtils.toString(structuredJson.getStream(), StandardCharsets.UTF_8);
    String actual = StructuredHelper.convertStructuredToFlat(flat);
    String expected = IOUtils.toString(simSDTJson.getStream(), StandardCharsets.UTF_8);
    RMDataFormat flatJson = new FlatJasonProvider(new TestDataTemplateProvider()).buildFlatJson(FlatFormat.SIM_SDT, templateId);
    List<String> errors = compere(flatJson.marshal(flatJson.unmarshal(actual)), expected);
    SoftAssertions softAssertions = new SoftAssertions();
    softAssertions.assertThat(errors).filteredOn(s -> s.startsWith("Missing")).containsExactlyInAnyOrder();
    softAssertions.assertThat(errors).filteredOn(s -> s.startsWith("Extra")).containsExactlyInAnyOrder();
    softAssertions.assertAll();
}

Example 3 with TestDataTemplateProvider

use of org.ehrbase.serialisation.templateprovider.TestDataTemplateProvider in project openEHR_SDK by ehrbase.

the class DBEncodeRoundTripTest method testCountRoundTrip.

@Test
@Ignore
public void testCountRoundTrip() throws IOException {
    String value = new String(Files.readAllBytes(Paths.get("src/test/resources/sample_data/test_all_type_count_flat.json")));
    RMDataFormat flatJson = new FlatJasonProvider(new TestDataTemplateProvider()).buildFlatJson(FlatFormat.SIM_SDT, "test_all_types.en.v1");
    Composition composition = flatJson.unmarshal(value);
    assertThat(composition).isNotNull();
    CompositionSerializer compositionSerializerRawJson = new CompositionSerializer();
    String db_encoded = compositionSerializerRawJson.dbEncode(composition);
    assertNotNull(db_encoded);
    String converted = new LightRawJsonEncoder(db_encoded).encodeCompositionAsString();
    assertNotNull(converted);
    Composition actual = new CanonicalJson().unmarshal(converted, Composition.class);
    String actualFlat = flatJson.marshal(actual);
    assertNotNull(actualFlat);
}

Example 4 with TestDataTemplateProvider

use of org.ehrbase.serialisation.templateprovider.TestDataTemplateProvider in project openEHR_SDK by ehrbase.

the class DBEncodeRoundTripTest method testMathFunctionRoundTrip.

@Test
@Ignore
public void testMathFunctionRoundTrip() throws IOException {
    String value = new String(Files.readAllBytes(Paths.get("src/test/resources/sample_data/corona_math_function_flat.json")));
    RMDataFormat flatJson = new FlatJasonProvider(new TestDataTemplateProvider()).buildFlatJson(FlatFormat.SIM_SDT, "Corona_Anamnese");
    Composition composition = flatJson.unmarshal(value);
    assertThat(composition).isNotNull();
    CompositionSerializer compositionSerializerRawJson = new CompositionSerializer();
    String db_encoded = compositionSerializerRawJson.dbEncode(composition);
    assertNotNull(db_encoded);
    String converted = new LightRawJsonEncoder(db_encoded).encodeCompositionAsString();
    assertNotNull(converted);
    Composition actual = new CanonicalJson().unmarshal(converted, Composition.class);
    String actualFlat = flatJson.marshal(actual);
    assertNotNull(actualFlat);
}

Example 5 with TestDataTemplateProvider

use of org.ehrbase.serialisation.templateprovider.TestDataTemplateProvider in project openEHR_SDK by ehrbase.

the class DBEncodeRoundTripTest method checkTestCase.

public void checkTestCase(TestCase testCase, SoftAssertions softly) throws IOException {
    String value = IOUtils.toString(testCase.simSDTJson.getStream(), UTF_8);
    RMDataFormat flatJson = new FlatJasonProvider(new TestDataTemplateProvider()).buildFlatJson(FlatFormat.SIM_SDT, testCase.templateId);
    Composition composition = flatJson.unmarshal(value);
    assertThat(composition).isNotNull();
    CompositionSerializer compositionSerializerRawJson = new CompositionSerializer();
    String db_encoded = compositionSerializerRawJson.dbEncode(composition);
    assertNotNull(db_encoded);
    String converted = new LightRawJsonEncoder(db_encoded).encodeCompositionAsString();
    assertNotNull(converted);
    Composition actual = new CanonicalJson().unmarshal(converted, Composition.class);
    String actualFlat = flatJson.marshal(actual);
    List<String> errors = compere(actualFlat, value);
    softly.assertThat(errors).filteredOn(s -> s.startsWith("Missing")).as("Test Case %s", testCase.id).containsExactlyInAnyOrder(testCase.missing);
    String[] extra = { "Extra path: test_all_types/test_all_types:0/identifier, value: 55175056", "Extra path: test_all_types/test_all_types:0/proportion_any|type, value: 1.0" };
    softly.assertThat(errors).filteredOn(s -> s.startsWith("Extra")).as("Test Case %s", testCase.id).containsExactlyInAnyOrder(testCase.extra);
}