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Example 1 with NoExecutableFileException

use of com.odysseusinc.arachne.portal.exception.NoExecutableFileException in project ArachneCentralAPI by OHDSI.

the class BaseSubmissionController method createSubmission.

@ApiOperation("Create and send submission.")
@RequestMapping(value = "/api/v1/analysis-management/{analysisId}/submissions", method = POST)
public JsonResult<List<DTO>> createSubmission(Principal principal, @RequestBody @Validated CreateSubmissionsDTO createSubmissionsDTO, @PathVariable("analysisId") Long analysisId) throws PermissionDeniedException, NotExistException, IOException, NoExecutableFileException, ValidationException {
    final JsonResult<List<DTO>> result;
    if (principal == null) {
        throw new PermissionDeniedException();
    }
    IUser user = userService.getByEmail(principal.getName());
    if (user == null) {
        throw new PermissionDeniedException();
    }
    Analysis analysis = analysisService.getById(analysisId);
    final List<Submission> submissions = AnalysisHelper.createSubmission(submissionService, createSubmissionsDTO.getDataSources(), user, analysis);
    final List<DTO> submissionDTOs = submissions.stream().map(s -> conversionService.convert(s, getSubmissionDTOClass())).collect(Collectors.toList());
    result = new JsonResult<>(NO_ERROR);
    result.setResult(submissionDTOs);
    return result;
}
Also used : PathVariable(org.springframework.web.bind.annotation.PathVariable) RequestParam(org.springframework.web.bind.annotation.RequestParam) AnalysisHelper(com.odysseusinc.arachne.portal.util.AnalysisHelper) Date(java.util.Date) PUT(org.springframework.web.bind.annotation.RequestMethod.PUT) ResultFile(com.odysseusinc.arachne.portal.model.ResultFile) LoggerFactory(org.slf4j.LoggerFactory) Valid(javax.validation.Valid) ApiOperation(io.swagger.annotations.ApiOperation) Analysis(com.odysseusinc.arachne.portal.model.Analysis) ResultFileSearch(com.odysseusinc.arachne.portal.model.search.ResultFileSearch) SubmissionFile(com.odysseusinc.arachne.portal.model.SubmissionFile) Path(java.nio.file.Path) SubmissionStatusHistoryElement(com.odysseusinc.arachne.portal.model.SubmissionStatusHistoryElement) ToPdfConverter(com.odysseusinc.arachne.portal.service.ToPdfConverter) BaseSubmissionService(com.odysseusinc.arachne.portal.service.submission.BaseSubmissionService) BaseAnalysisService(com.odysseusinc.arachne.portal.service.analysis.BaseAnalysisService) ContentStorageService(com.odysseusinc.arachne.storage.service.ContentStorageService) ResultFileDTO(com.odysseusinc.arachne.portal.api.v1.dto.ResultFileDTO) HttpUtils(com.odysseusinc.arachne.portal.util.HttpUtils) ArachneFileMeta(com.odysseusinc.arachne.storage.model.ArachneFileMeta) Collectors(java.util.stream.Collectors) FileNotFoundException(java.io.FileNotFoundException) IUser(com.odysseusinc.arachne.portal.model.IUser) FileDTO(com.odysseusinc.arachne.portal.api.v1.dto.FileDTO) IOUtils(org.apache.commons.io.IOUtils) List(java.util.List) Principal(java.security.Principal) BaseSubmissionDTO(com.odysseusinc.arachne.portal.api.v1.dto.BaseSubmissionDTO) SubmissionStatus(com.odysseusinc.arachne.portal.model.SubmissionStatus) FileDtoContentHandler(com.odysseusinc.arachne.portal.api.v1.dto.converters.FileDtoContentHandler) RequestMapping(org.springframework.web.bind.annotation.RequestMapping) GET(org.springframework.web.bind.annotation.RequestMethod.GET) Submission(com.odysseusinc.arachne.portal.model.Submission) ValidationException(com.odysseusinc.arachne.portal.exception.ValidationException) ArrayList(java.util.ArrayList) JsonResult(com.odysseusinc.arachne.commons.api.v1.dto.util.JsonResult) RequestBody(org.springframework.web.bind.annotation.RequestBody) NoExecutableFileException(com.odysseusinc.arachne.portal.exception.NoExecutableFileException) ApproveDTO(com.odysseusinc.arachne.portal.api.v1.dto.ApproveDTO) NO_ERROR(com.odysseusinc.arachne.commons.api.v1.dto.util.JsonResult.ErrorCode.NO_ERROR) SubmissionStatusHistoryElementDTO(com.odysseusinc.arachne.portal.api.v1.dto.SubmissionStatusHistoryElementDTO) POST(org.springframework.web.bind.annotation.RequestMethod.POST) LinkedList(java.util.LinkedList) UploadFileDTO(com.odysseusinc.arachne.portal.api.v1.dto.UploadFileDTO) BaseController(com.odysseusinc.arachne.portal.api.v1.controller.BaseController) Validated(org.springframework.validation.annotation.Validated) Logger(org.slf4j.Logger) DELETE(org.springframework.web.bind.annotation.RequestMethod.DELETE) HttpServletResponse(javax.servlet.http.HttpServletResponse) IOException(java.io.IOException) CommonAnalysisExecutionStatusDTO(com.odysseusinc.arachne.commons.api.v1.dto.CommonAnalysisExecutionStatusDTO) CreateSubmissionsDTO(com.odysseusinc.arachne.portal.api.v1.dto.CreateSubmissionsDTO) SubmissionFileDTO(com.odysseusinc.arachne.portal.api.v1.dto.SubmissionFileDTO) PermissionDeniedException(com.odysseusinc.arachne.portal.exception.PermissionDeniedException) ContentStorageHelper(com.odysseusinc.arachne.portal.util.ContentStorageHelper) HttpStatus(org.springframework.http.HttpStatus) NotExistException(com.odysseusinc.arachne.portal.exception.NotExistException) SubmissionDTO(com.odysseusinc.arachne.portal.api.v1.dto.SubmissionDTO) BaseSubmissionAndAnalysisTypeDTO(com.odysseusinc.arachne.portal.api.v1.dto.BaseSubmissionAndAnalysisTypeDTO) SubmissionInsightService(com.odysseusinc.arachne.portal.service.submission.SubmissionInsightService) StringUtils(org.springframework.util.StringUtils) Submission(com.odysseusinc.arachne.portal.model.Submission) Analysis(com.odysseusinc.arachne.portal.model.Analysis) IUser(com.odysseusinc.arachne.portal.model.IUser) List(java.util.List) ArrayList(java.util.ArrayList) LinkedList(java.util.LinkedList) PermissionDeniedException(com.odysseusinc.arachne.portal.exception.PermissionDeniedException) ResultFileDTO(com.odysseusinc.arachne.portal.api.v1.dto.ResultFileDTO) FileDTO(com.odysseusinc.arachne.portal.api.v1.dto.FileDTO) BaseSubmissionDTO(com.odysseusinc.arachne.portal.api.v1.dto.BaseSubmissionDTO) ApproveDTO(com.odysseusinc.arachne.portal.api.v1.dto.ApproveDTO) SubmissionStatusHistoryElementDTO(com.odysseusinc.arachne.portal.api.v1.dto.SubmissionStatusHistoryElementDTO) UploadFileDTO(com.odysseusinc.arachne.portal.api.v1.dto.UploadFileDTO) CommonAnalysisExecutionStatusDTO(com.odysseusinc.arachne.commons.api.v1.dto.CommonAnalysisExecutionStatusDTO) CreateSubmissionsDTO(com.odysseusinc.arachne.portal.api.v1.dto.CreateSubmissionsDTO) SubmissionFileDTO(com.odysseusinc.arachne.portal.api.v1.dto.SubmissionFileDTO) SubmissionDTO(com.odysseusinc.arachne.portal.api.v1.dto.SubmissionDTO) BaseSubmissionAndAnalysisTypeDTO(com.odysseusinc.arachne.portal.api.v1.dto.BaseSubmissionAndAnalysisTypeDTO) ApiOperation(io.swagger.annotations.ApiOperation) RequestMapping(org.springframework.web.bind.annotation.RequestMapping)

Aggregations

CommonAnalysisExecutionStatusDTO (com.odysseusinc.arachne.commons.api.v1.dto.CommonAnalysisExecutionStatusDTO)1 JsonResult (com.odysseusinc.arachne.commons.api.v1.dto.util.JsonResult)1 NO_ERROR (com.odysseusinc.arachne.commons.api.v1.dto.util.JsonResult.ErrorCode.NO_ERROR)1 BaseController (com.odysseusinc.arachne.portal.api.v1.controller.BaseController)1 ApproveDTO (com.odysseusinc.arachne.portal.api.v1.dto.ApproveDTO)1 BaseSubmissionAndAnalysisTypeDTO (com.odysseusinc.arachne.portal.api.v1.dto.BaseSubmissionAndAnalysisTypeDTO)1 BaseSubmissionDTO (com.odysseusinc.arachne.portal.api.v1.dto.BaseSubmissionDTO)1 CreateSubmissionsDTO (com.odysseusinc.arachne.portal.api.v1.dto.CreateSubmissionsDTO)1 FileDTO (com.odysseusinc.arachne.portal.api.v1.dto.FileDTO)1 ResultFileDTO (com.odysseusinc.arachne.portal.api.v1.dto.ResultFileDTO)1 SubmissionDTO (com.odysseusinc.arachne.portal.api.v1.dto.SubmissionDTO)1 SubmissionFileDTO (com.odysseusinc.arachne.portal.api.v1.dto.SubmissionFileDTO)1 SubmissionStatusHistoryElementDTO (com.odysseusinc.arachne.portal.api.v1.dto.SubmissionStatusHistoryElementDTO)1 UploadFileDTO (com.odysseusinc.arachne.portal.api.v1.dto.UploadFileDTO)1 FileDtoContentHandler (com.odysseusinc.arachne.portal.api.v1.dto.converters.FileDtoContentHandler)1 NoExecutableFileException (com.odysseusinc.arachne.portal.exception.NoExecutableFileException)1 NotExistException (com.odysseusinc.arachne.portal.exception.NotExistException)1 PermissionDeniedException (com.odysseusinc.arachne.portal.exception.PermissionDeniedException)1 ValidationException (com.odysseusinc.arachne.portal.exception.ValidationException)1 Analysis (com.odysseusinc.arachne.portal.model.Analysis)1