Examples with AbstractStudyFile com.odysseusinc.arachne.portal.model.AbstractStudyFile used on opensource projects

Example 1 with AbstractStudyFile

use of com.odysseusinc.arachne.portal.model.AbstractStudyFile in project ArachneCentralAPI by OHDSI.

the class StudyFileServiceImpl method archiveFiles.

@Override
public void archiveFiles(OutputStream os, Path filePath, List<? extends AbstractStudyFile> files) throws IOException {
    ZipOutputStream zos = new ZipOutputStream(os);
    for (AbstractStudyFile studyFile : files) {
        ZipEntry entry = new ZipEntry(studyFile.getRealName());
        Path file = filePath.resolve(studyFile.getUuid());
        entry.setSize(file.toFile().length());
        zos.putNextEntry(entry);
        zos.write(Files.readAllBytes(file));
        zos.closeEntry();
    }
    zos.flush();
    zos.close();
}

Example 2 with AbstractStudyFile

use of com.odysseusinc.arachne.portal.model.AbstractStudyFile in project ArachneCentralAPI by OHDSI.

the class StudyFileServiceImpl method getFileInputStream.

@Override
public InputStream getFileInputStream(AbstractStudyFile studyFile) throws FileNotFoundException {
    Objects.requireNonNull(studyFile, "File must not be null");
    final File file = getPathToFile(studyFile).toFile();
    if (!file.exists()) {
        if (!StringUtils.isEmpty(studyFile.getLink())) {
            InputStream response = getInputStream(studyFile);
            if (response != null) {
                return response;
            }
        }
        throw new FileNotFoundException();
    }
    return new FileInputStream(file);
}