Examples with SubmissionInsight com.odysseusinc.arachne.portal.model.SubmissionInsight used on opensource projects

Example 6 with SubmissionInsight

use of com.odysseusinc.arachne.portal.model.SubmissionInsight in project ArachneCentralAPI by OHDSI.

the class BaseAdminServiceImpl method deleteSubmissionInsight.

private void deleteSubmissionInsight(SB submission) {
    SubmissionInsight insight = submission.getSubmissionInsight();
    if (insight == null) {
        return;
    }
    List<SubmissionInsightSubmissionFile> submissionInsightSubmissionFiles = insight.getSubmissionInsightSubmissionFiles();
    for (SubmissionInsightSubmissionFile link : submissionInsightSubmissionFiles) {
        CommentTopic topic = link.getCommentTopic();
        List<Comment> comments = topic.getComments();
        commentService.deleteComments(comments);
        commentService.deleteTopic(topic);
    }
    submissionInsightService.deleteSubmissionInsightSubmissionFileLinks(submissionInsightSubmissionFiles);
    submissionInsightService.tryDeleteSubmissionInsight(insight.getId());
}

Example 7 with SubmissionInsight

use of com.odysseusinc.arachne.portal.model.SubmissionInsight in project ArachneCentralAPI by OHDSI.

the class BaseSubmissionInsightServiceImpl method extractCommentTopics.

private Set<CommentTopic> extractCommentTopics(SubmissionInsight insight) {
    final Stream<CommentTopic> submissionFilesTopics = insight.getSubmissionInsightSubmissionFiles().stream().map(SubmissionInsightSubmissionFile::getCommentTopic);
    final Submission submission = insight.getSubmission();
    final Stream<CommentTopic> resultFileTopics = submission.getResultFiles().stream().map(ResultFile::getCommentTopic);
    return Stream.concat(submissionFilesTopics, resultFileTopics).map(commentTopic -> {
        commentTopic.setComments(new LinkedList<>());
        return commentTopic;
    }).collect(Collectors.toSet());
}

Example 8 with SubmissionInsight

use of com.odysseusinc.arachne.portal.model.SubmissionInsight in project ArachneCentralAPI by OHDSI.

the class BaseSubmissionInsightServiceImpl method getSubmissionInsight.

@Override
@PostAuthorize("@ArachnePermissionEvaluator.addPermissions(principal, returnObject )")
public SubmissionInsight getSubmissionInsight(Long submissionId) throws NotExistException {
    final SubmissionInsight insight = submissionInsightRepository.findOneBySubmissionId(submissionId);
    throwNotExistExceptionIfNull(insight, submissionId);
    return insight;
}

Example 9 with SubmissionInsight

use of com.odysseusinc.arachne.portal.model.SubmissionInsight in project ArachneCentralAPI by OHDSI.

the class BaseSubmissionInsightServiceImpl method updateSubmissionInsight.

@Override
@PreAuthorize("hasPermission(#submissionId, 'Submission', " + "T(com.odysseusinc.arachne.portal.security.ArachnePermission).EDIT_INSIGHT)")
public SubmissionInsight updateSubmissionInsight(Long submissionId, SubmissionInsight insight) throws NotExistException {
    LOGGER.info(UPDATING_INSIGHT_LOG, submissionId);
    final SubmissionInsight exist = submissionInsightRepository.findOneBySubmissionId(submissionId);
    throwNotExistExceptionIfNull(exist, submissionId);
    if (insight.getName() != null) {
        exist.setName(insight.getName());
    }
    if (insight.getDescription() != null) {
        exist.setDescription(insight.getDescription());
    }
    return submissionInsightRepository.save(exist);
}

Example 10 with SubmissionInsight

use of com.odysseusinc.arachne.portal.model.SubmissionInsight in project ArachneCentralAPI by OHDSI.

the class BaseArachneSecureServiceImpl method getRolesByCommentTopic.

@Override
public List<ParticipantRole> getRolesByCommentTopic(ArachneUser user, CommentTopic topic) {
    SubmissionInsightSubmissionFile submissionInsightLink = submissionInsightSubmissionFileRepository.findByCommentTopic(topic);
    SubmissionInsight insight;
    if (submissionInsightLink == null) {
        ResultFile resultFile = resultFileRepository.findByCommentTopic(topic);
        insight = resultFile.getSubmission().getSubmissionInsight();
    } else {
        insight = submissionInsightLink.getSubmissionInsight();
    }
    return getRolesByInsight(user, insight);
}